Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3645 ATGGCGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCACAAACTGGGTCGGTGACCAATGAAGCTTTGAACTTGGATCAATGGATTGAGGAGCCGCTTCAGAGGATTAGCGAAGCTGCTGCGAGGCTAAGGGGGCGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCCCCTTATCCTCAACAACTTCACCGGGTTCTACCTCAACCGTCTTATCATCAAGTTCATCAGCTTGCTCCTGCGCCTCATATTTATATCCCACCAGAAGCCCGGAATATCTCTATTGAATTGAACAATTTTTTGGTCAATTCGAGTAATGGTACTGGGTTGCAGGCTGGGGAAGGTAGTGTGGCGGCTGTGGAGAGAATGGATGAAGAGGAGGCGCCGCCGCTGAAAGCGTGTGAGAACAACAATGGTGTCATGGAGGATGAGACCTTGCAGAAGAAGGATGATGTTGAAAAGGCTGGTGGCAGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGATTTGGCCAAGGAGCCTGTTTTGACTTGCTGTGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGCTGCATCTGCATTCAGATGCTAGAGAATGTCCAGTTTGCAAGGGAGAGGTGACAGTTAAGAGTGTTACCCCCATATACGGCCGTGGAAACAATGCCCGTGTTCTTGAGGAGGATTCCGCTCTAAAAATCCCTCCTAGGCCACAAGCAAAGCGTGTTGAGAGTCTGAGACAAACCCTTCAGAGAAATGCATTTGCTCTCCCTGTGGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTAGGGATTTAGTTCAGCCAAATGAACCAGAAAATGCCCGCGGAACAGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGAAGAGAGCAGAATCCTGTGCCACCCCCGGATGATGCTGCGAGTTTGAATCAGGACAATGTTAATGGTGCTGAATTGGGAGGGGATAACCGCAGGGTGCAATCCCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCAACTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTGGGCAGAAACCAAGAACAACCACCTCCTTCAGGTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAACAGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTCTGAACTGA 1368 0.4781 MAEENSDAMNLDLNLGPDPEPQTGSVTNEALNLDQWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQLHRVLPQPSYHQVHQLAPAPHIYIPPEARNISIELNNFLVNSSNGTGLQAGEGSVAAVERMDEEEAPPLKACENNNGVMEDETLQKKDDVEKAGGSDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTVKSVTPIYGRGNNARVLEEDSALKIPPRPQAKRVESLRQTLQRNAFALPVEEMIRRLGNRIDLTRDLVQPNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDAASLNQDNVNGAELGGDNRRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPSGDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDSGDSRAPRRRRLN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3645 455 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Mal3g3645 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 433 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mal3g3645 455 CDD RING-HC_AtRMA_like 172 216 - -
Mal3g3645 455 MobiDBLite consensus disorder prediction 383 402 - -
Mal3g3645 455 SUPERFAMILY RING/U-box 170 227 - -
Mal3g3645 455 MobiDBLite consensus disorder prediction 310 343 - -
Mal3g3645 455 MobiDBLite consensus disorder prediction 1 23 - -
Mal3g3645 455 PANTHER OS01G0830200 PROTEIN 13 433 - -
Mal3g3645 455 MobiDBLite consensus disorder prediction 424 455 - -
Mal3g3645 455 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Mal3g3645 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 228 IPR013083 -
Mal3g3645 455 SMART ring_2 174 214 IPR001841 -
Mal3g3645 455 MobiDBLite consensus disorder prediction 427 455 - -
Mal3g3645 455 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Mal3g3645 455 MobiDBLite consensus disorder prediction 385 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3645 Mal-Chr3 113797962 113799329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3645 1 446 C3H Transcription Factor Family AT3G58030 52.473 2.69e-135 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3645 3 113797962 113799329 Mal3g3645 3 113797962 113799329 ECH