Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3624 ATGGATATGCGCAAGAGAGGAAGACCCGAACATGGATTTAACAACAATGGCGGATTCAAGAAATCCAGACAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGCGGTTATAATGCTGTTTCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTGCAGCCCCACGAAATGCACATGCACCCAATGGGTCTGCACCATCTGCTGTTAAAAGCCGCATATGCAGCAAGTTTAATACTGCCGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGAGAATGGGAACTTGGGAAGCCTGTAACTCTATCATTTGATGATCATCGTCACACTCACATGGGACCACCCAATGCAGGCCGTTTTGGGGGTCATCGGATGGAGCCTCCTCCTGTTCCAGCCAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTTGAAGCTTCCTTGGCTGGAGCGATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATATGTCGTCAAACTGGTGCCAAACTTGCAATTCGAGACCATGAATCTGACCCAAATCTCAGAAACATTGAACTTGAGGGAACTTTTGAACAAATTAAGGATGCCAGTAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAAAACAAATAAAGGCGCTCATGGTCATGGAGCCCCTGGCCATCATGGAAATAACTTGAAAACAAAACTGTGTGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGAACTGCGTAAATGA 897 0.4638 MDMRKRGRPEHGFNNNGGFKKSRQEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAVSQMMNLTPAAPPAPRNVAAPRNAHAPNGSAPSAVKSRICSKFNTAEGCKFGDKCHFAHGEWELGKPVTLSFDDHRHTHMGPPNAGRFGGHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIRDHESDPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTNKGAHGHGAPGHHGNNLKTKLCENFAKGSCTFGERCHFAHGAAELRK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3624 298 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Mal3g3624 298 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Mal3g3624 298 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Mal3g3624 298 MobiDBLite consensus disorder prediction 79 99 - -
Mal3g3624 298 MobiDBLite consensus disorder prediction 17 36 - -
Mal3g3624 298 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 298 - -
Mal3g3624 298 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Mal3g3624 298 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 298 - -
Mal3g3624 298 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Mal3g3624 298 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Mal3g3624 298 Gene3D - 266 298 - -
Mal3g3624 298 Gene3D - 96 133 - -
Mal3g3624 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 60 IPR000571 GO:0046872
Mal3g3624 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 292 IPR000571 GO:0046872
Mal3g3624 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Mal3g3624 298 Gene3D K Homology domain, type 1 169 265 IPR036612 GO:0003723
Mal3g3624 298 MobiDBLite consensus disorder prediction 1 36 - -
Mal3g3624 298 Pfam KH domain 175 237 IPR004088 GO:0003723
Mal3g3624 298 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Mal3g3624 298 SMART kh_6 171 241 IPR004087 GO:0003676
Mal3g3624 298 CDD KH-I 174 237 - -
Mal3g3624 298 SUPERFAMILY CCCH zinc finger 267 297 IPR036855 GO:0046872
Mal3g3624 298 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 244 IPR036612 GO:0003723
Mal3g3624 298 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Mal3g3624 298 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3624 Mal-Chr3 113612347 113615854 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal3g3624 KH_1 7.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3624 - - mtr:MTR_7g093130 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3624 3 113612347 113615854 Mal3g3624 3 113612347 113615854 ECH
Mal3g3624 3 113612347 113615854 Mal1g3647 1 68276812 68279419 PCT