Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3615 ATGGTCGCAAATAATCAACAAGGTCATAATATGTGGAAGATAGATGTGAATCTTACAGTCTTTACATGCCATATTGAAGATGAAGATGCTGTGAGAGCCCTACTTGTTGTGAATGTAATGGATCATTCATCTTGTTACTTTAGAGATCAATGTTCAATTTGTTTGGAAGAGCTCTCCAATGGATCACAGTCAGAACATGGTATGACCATCAAATGTTTGCATGTTTTTCATAGAGAGTGTATGTTACAATGGCTTAAAAGATGCTACACTAGTCAATCATCCCACTCGTGTCCATTGTGTTGCAATAATCGAATTGTGTATTATCTTTGA 330 0.3606 MVANNQQGHNMWKIDVNLTVFTCHIEDEDAVRALLVVNVMDHSSCYFRDQCSICLEELSNGSQSEHGMTIKCLHVFHRECMLQWLKRCYTSQSSHSCPLCCNNRIVYYL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3615 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 105 IPR013083 -
Mal3g3615 109 Pfam Ring finger domain 49 100 IPR001841 -
Mal3g3615 109 ProSiteProfiles Zinc finger RING-type profile. 51 100 IPR001841 -
Mal3g3615 109 SUPERFAMILY RING/U-box 50 102 - -
Mal3g3615 109 SMART ring_2 51 100 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3615 Mal-Chr3 113516162 113516491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3615 49 100 C3H Transcription Factor Family AT4G12190 44.231 1.33e-09 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3615 - - mtr:MTR_5g094680 139.428