Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3600 ATGGATCATAATTTTAACCTTATTTCAGAAAACATGAGTTATGCTTTTGACCTGAAAATAAGTTCAATCGAAGATCCAACCTTTACAATTCCAAAAGTTGTTCCTTTTAGTAACTACTTTTACATTAATTTCCATTACGAACAATTTAGTTTACCCTTGCATATCAATGCCTCAAACTCAATATTTGACTATAAGACCACCATGAATCAAATCGTATTTATTCCTTGTGACATCTTATGTAATTGCAATGAAATTACATTATTAGATAAGGATGCCAACATCTTATATGACTCTTTTTCCTCCATGCCTATTTCTCCCGACGTATTAGAACAAATCCTGCCCAAGATCGGAGAATATGCTGAGAAGATGGTCGCAAATAACCACGAAGGTCATATTATGTGGAAGATAGATGTGAAACTTGATGTCTTTACGTGGTATATTGAAGATGGTGATGCTGTGGATGCCCTACTTGTTGTGGATGGAATGCATCATTCATCTTGTTACTCTACAAATCAATGTTCAATTTGTTTGGAAGAGCTCTCCAATGGATATGTTATGACCAAATGTTTGCATGTTTTTCATAGAGAGTGTATTTTCCAATGGCTCAAAAGATGCTCCCATAGTCGATCATCTCTCTCGTGTCCATTGTGTCGCAATAATCGGATTGTGGATTATCTTTGA 681 0.3524 MDHNFNLISENMSYAFDLKISSIEDPTFTIPKVVPFSNYFYINFHYEQFSLPLHINASNSIFDYKTTMNQIVFIPCDILCNCNEITLLDKDANILYDSFSSMPISPDVLEQILPKIGEYAEKMVANNHEGHIMWKIDVKLDVFTWYIEDGDAVDALLVVDGMHHSSCYSTNQCSICLEELSNGYVMTKCLHVFHRECIFQWLKRCSHSRSSLSCPLCRNNRIVDYL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3600 226 Pfam Ring finger domain 171 218 IPR001841 -
Mal3g3600 226 SMART ring_2 173 217 IPR001841 -
Mal3g3600 226 SUPERFAMILY RING/U-box 172 221 - -
Mal3g3600 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 224 IPR013083 -
Mal3g3600 226 ProSiteProfiles Zinc finger RING-type profile. 173 218 IPR001841 -
Mal3g3600 226 PANTHER PROTEIN GOLIATH 117 218 - -
Mal3g3600 226 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 117 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3600 Mal-Chr3 113332390 113333070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3600 173 218 C3H Transcription Factor Family AT5G41430 53.061 3.07e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3600 - - mtr:MTR_5g094680 283.108