Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3573 ATGGATTTGAATTCTTGTTACCAACAACTTCAACAGAACCAACCCAATTCAAGGTTGCTTCGTTTTCGCTCAAATTTGAAACAAGGTGAAAGTTGTGGTGGTAGTGCTGCTGCTGCTACAAATTCTGGTGAAACTTCTTCATCTACCTTTCGAGAATTCATGGACCATAATCCTTCTAACAACCAGTCTTCATTTTCTCAAAGAGACATGAATTCTCAGCAAGGTTATAGAATGGATCAACACAAAGGTTTTTATTCGAATCTTTTAAGGCAAAGTAGTTCCCCTGCTGGTCATTTATCCAACAACATCATCTCCTTTCGAAATGGGTATGACACTATGAAAGGTGTTCAAAACTATGATGCGGTGAATGACAGTGATGGTGAACTTACATTATCTATGAACATATTGAAGAATCAAATTGGCCTCCCACCAAAAAGTCCTTCTTCATTGGGAATGTTTTCACAGAACTCCAAAATGGTGAATGATGGCATTGGAACAACTAGCCACGATGATCGAAGACAAGTAGGTAGCAACGACGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGATCAGAATGCAGAGGTAGGAAATCAAGTTGATACATTATCACATCACTTGAGTTTGCCAAGAAAGTCATCAGAAATGTTTGTTGTGGAGAATTTGGTCCAGTTTCCAGATTTTGTTCCAAGCAGTATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTCGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGCAAAAAGAGCTAAATGCAGATGCAGAAACCAGAAATGA 939 0.3802 MDLNSCYQQLQQNQPNSRLLRFRSNLKQGESCGGSAAAATNSGETSSSTFREFMDHNPSNNQSSFSQRDMNSQQGYRMDQHKGFYSNLLRQSSSPAGHLSNNIISFRNGYDTMKGVQNYDAVNDSDGELTLSMNILKNQIGLPPKSPSSLGMFSQNSKMVNDGIGTTSHDDRRQVGSNDDAQYYGHKFIYDSNDQNAEVGNQVDTLSHHLSLPRKSSEMFVVENLVQFPDFVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNQK* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3573 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 309 IPR036638 GO:0046983
Mal3g3573 312 PANTHER TRANSCRIPTION FACTOR BHLH130 44 311 - -
Mal3g3573 312 Coils Coil 289 309 - -
Mal3g3573 312 Gene3D - 244 312 IPR036638 GO:0046983
Mal3g3573 312 SMART finulus 248 298 IPR011598 GO:0046983
Mal3g3573 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 311 - -
Mal3g3573 312 MobiDBLite consensus disorder prediction 31 74 - -
Mal3g3573 312 Pfam Helix-loop-helix DNA-binding domain 248 293 IPR011598 GO:0046983
Mal3g3573 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 292 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3573 Mal-Chr3 112943473 112945649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3573 36 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 44.853 5.80e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g3573 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3573 - - mtr:MTR_7g092540 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3573 3 112943473 112945649 Mal3g3573 3 112943473 112945649 ECH
Mal3g3573 3 112943473 112945649 Mal7g2366 7 83088609 83091676 ECH
Mal3g3573 3 112943473 112945649 Mal1g3709 1 71120667 71123568 PCT