Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3571 ATGGAACAAACTATAGTAGGATTAAGTGGATCCATTCACGACGATTCTGTTCAATTTAACGAAGAAATCCAAGGAATTATGGTTCCGGCGCCGGCACCGGAAAACGCTAGCTCATTCACCGCGCTTCTGGAGCTTCCGCCGACGCAGGCCGTAGAGCTTCTTCATTTGCCTGAGCAAAAACCCTATCTTCCGAACTCTTCTAACGGAAATTTGACTTTTCCTACAAACGCCGCGTTGATTGAACGCGCCGCGAAATTCTCAGTGTTCGCCGGAGAGAATTCTTCGCCGGGAGAGTCGCGATTGTTTCCGGTGGAAAGTGTGAAGAACGAGCCTCAAGAGTCTGATTCGAACCCTTGCTCGACGCAAGAGTGCGTTTCGGATCCAGCAGTGAATAAGAATCAGAGAAACGTGAAGAGAAAAGAGCGAGAGAAGAAGGGTAAAGCGTCGTCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAATCCTCCGGTGACGGTGAGAAGCTTCCGTACGTCCACGTTCGCGTTCGACGGGGTCAAGCCACTGATAGCCATAGCTTGGCAGAACGAGCTAGGAGAGAGAAAATTAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGATGCAACAAGATATCTGGAACGGCATTGGTTCTGGATGAAATCATCAATCATGTGCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTACTGATGGGTCATCTTTAATGGACAGTAACTTACCTACCATGGTTACGCCTCTTGTGTGGCCAGAAATCCCACTCAACAGTAACAGACAGCATTATCAACAACAGTGGCAATTTGATGCATTCCATCAACCGCTCTGGGGAAGGGAAGAAGACAATCATAATTTCACGACTCCAGAAAACTCACTTTTGAGTTATAACTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1020 0.4686 MEQTIVGLSGSIHDDSVQFNEEIQGIMVPAPAPENASSFTALLELPPTQAVELLHLPEQKPYLPNSSNGNLTFPTNAALIERAAKFSVFAGENSSPGESRLFPVESVKNEPQESDSNPCSTQECVSDPAVNKNQRNVKRKEREKKGKASSSKKSKSVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLATDGSSLMDSNLPTMVTPLVWPEIPLNSNRQHYQQQWQFDAFHQPLWGREEDNHNFTTPENSLLSYNSSANSASLHSNQLKMEL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3571 339 Gene3D - 176 249 IPR036638 GO:0046983
Mal3g3571 339 MobiDBLite consensus disorder prediction 133 169 - -
Mal3g3571 339 SMART finulus 185 235 IPR011598 GO:0046983
Mal3g3571 339 MobiDBLite consensus disorder prediction 109 132 - -
Mal3g3571 339 Pfam Helix-loop-helix DNA-binding domain 183 230 IPR011598 GO:0046983
Mal3g3571 339 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 339 IPR024097 GO:0006355
Mal3g3571 339 Coils Coil 219 239 - -
Mal3g3571 339 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 339 - -
Mal3g3571 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 229 IPR011598 GO:0046983
Mal3g3571 339 MobiDBLite consensus disorder prediction 92 169 - -
Mal3g3571 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 248 IPR036638 GO:0046983
Mal3g3571 339 CDD bHLH_AtBPE_like 169 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3571 Mal-Chr3 112912356 112918129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3571 15 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.499 9.13e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g3571 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3571 - - gmx:100814124 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3571 3 112912356 112918129 Mal3g3571 3 112912356 112918129 ECH
Mal3g3571 3 112912356 112918129 Mal1g3716 1 71275766 71280347 PCT