Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3561 ATGGCTGATAACCCTTACTCTAATCTTTTCTCTTCTTCATCAAGTTTCTTCAAATTCAACCATATTTTTCCATCTTCAAACCCTTCTCCACAACAACAACACCACCACCCTTTTCTTCACCACCACAACACCTTTTTCCACTACCATCATATTTCATCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTACCTCTTTTAAACCTAATCCCAACAAAACAAGAAAAATATGATGAAGATCAACAAGATCAACATGAGGAGGATATTCAAGACCTTCTTCCTTGCACTGCCATGGATTTAGAAGAAAGTGAAGATACTAATACTGTTACTGTTGCACTTCACATAGGTTTGCCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTAATAACTCCTCAGAGATCAGTGTGACTGATAATAAAGAACATGGTGGTGAAGATTCTTCTTGTTCAGGTTTCATGGTTAATAATAGGCTTAACAAAGGACAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACTCAATTCTCTTGCCCTGTTTGTTCCAAAACTTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGTACACAACCAACAGGCATGCTAAGGCTACCTTGTTACTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCATTTATGTGTAGAAAATGTAGCAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATTTGTGGTTCTGATTTTAAACATAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAGTGGACATGGTGCTTATGGGTTTGATGGATTTGAAGAAGAGGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGAATGA 1020 0.3853 MADNPYSNLFSSSSSFFKFNHIFPSSNPSPQQQHHHPFLHHHNTFFHYHHISSSSPPSPPLREELPLLNLIPTKQEKYDEDQQDQHEEDIQDLLPCTAMDLEESEDTNTVTVALHIGLPNPSAAEMASVLSNNSSEISVTDNKEHGGEDSSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHGAYGFDGFEEEDEPASEVEQDNE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3561 339 SMART c2h2final6 265 285 IPR013087 -
Mal3g3561 339 SMART c2h2final6 181 203 IPR013087 -
Mal3g3561 339 PANTHER ZINC FINGER PROTEIN WIP2 9 339 IPR043584 GO:0003700|GO:0010468
Mal3g3561 339 Pfam Zinc finger, C2H2 type 181 200 IPR013087 -
Mal3g3561 339 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Mal3g3561 339 Gene3D Classic Zinc Finger 228 317 - -
Mal3g3561 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Mal3g3561 339 Gene3D Classic Zinc Finger 180 203 - -
Mal3g3561 339 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 9 339 - -
Mal3g3561 339 SUPERFAMILY beta-beta-alpha zinc fingers 247 285 IPR036236 -
Mal3g3561 339 SUPERFAMILY beta-beta-alpha zinc fingers 177 203 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3561 Mal-Chr3 112804743 112807096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3561 4 339 C2H2 Transcription Factor Family AT3G57670 61.680 2.09e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g3561 zf-C2H2 0.0042 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3561 3 112804743 112807096 Mal3g3561 3 112804743 112807096 ECH
Mal3g3561 3 112804743 112807096 Mal1g3738 1 72455118 72458490 PCT