Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3554 ATGGAAAAAGGGGCGAGCAAGAAGAAAACATCATCACCTCTCTCTTTGGACCAATTCATCTCTATCACAACCCCTCTTCTCGACTTGGAAAAGGATGCTGAGATATCGAGCTCAATTGCCACTGGTGCGTCAAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTCAATTTGAAGTGTGTGGATGTTCAGACGGGGCTTATGGGAAAGTCTCTGATCGAGTTGCAATCCACAAAAGCAGATGTGCTTCCTGCACACAAGTTTGGCACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCGGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATTCCTGTATTGTTTGGGGAGAGGCAACCAACAGTGTCGAAGAAGGATGTATCCTTCACTTCCATTAATAAAAATCTTGATCACTCTCAGAAAGATGCAATTTCAAAAGCCCTATCGTCGAAGAATGTATTCTTGCTACATGGACCTCCTGGAACAGGCAAAACTACAACAGTGGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGGTTGGTCATCCTGCACGTTTATTGCCTCAAGTGGTGGACAGTGCACTGGATGCCCAGGTACTACGAGGAGATAATAGTGGTCTCGCAAATGACATTCGGAAAGAAATGAAGGTATTAAATGGAAAGCTGCTAAAAACCAAAGAAAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGACTCTATCCAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTAAAGACGTGATTAAAACTTCAGATGTAATATTAACTACTCTTATTGGGGCTTCCTCTAAGAAACTTGAACAAACTTCATTTGATTTGGTGATTATTGACGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTAGCAGGGGACCATCTTCAACTTCCTCCAACGATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTTGAAAGACTTGCAGAACTGTATGGAGATGAAGTCACATCTATGCTTACTGTCCAGTACCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTCAAGGCTCATGCATGTGTTGCTGCACATATGCTATATGATCTTGAGGGCGTGAAGAAGACATCTTCAACTGAACCAACCCTTCTTCTCGTAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCCTTAATGAAGGTGAATCTGAGGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTTCCTTCAGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTACTCAAGATGTTAAAAAACAAGGAGAACTCATTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAAGAAGCCATTATCATATCAATGGTTCGATCAAATTCAAAACAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACTCGGGCAAGAAGGCAATGCTGTATCGTCTGTGACACTGAAACAGTCAGTAGTGATGGATTTCTAAAGCGGTTGATTGAATATTTTGAAGAGCACGGCGAATATCAGAGTGCATCTGAGTACCAGAATGAGTAG 1947 0.4222 MEKGASKKKTSSPLSLDQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVSFTSINKNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVKDVIKTSDVILTTLIGASSKKLEQTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVAAHMLYDLEGVKKTSSTEPTLLLVDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKQEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3554 648 Gene3D - 444 648 IPR027417 -
Mal3g3554 648 PANTHER HELICASE WITH ZINC FINGER 2 1 646 - -
Mal3g3554 648 SMART AAA_5 212 434 IPR003593 -
Mal3g3554 648 SMART ultradead3 194 445 IPR014001 -
Mal3g3554 648 CDD DEXXQc_SMUBP2 197 445 - -
Mal3g3554 648 Pfam AAA domain 198 412 IPR041677 GO:0004386
Mal3g3554 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 634 IPR027417 -
Mal3g3554 648 CDD SF1_C_Upf1 446 634 IPR041679 -
Mal3g3554 648 Gene3D - 42 144 - -
Mal3g3554 648 Coils Coil 299 345 - -
Mal3g3554 648 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 1 646 - -
Mal3g3554 648 TIGRFAM TIGR00376: putative DNA helicase 345 643 IPR004483 GO:0003677|GO:0005524
Mal3g3554 648 Pfam AAA domain 421 617 IPR041679 -
Mal3g3554 648 Gene3D - 24 428 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3554 Mal-Chr3 112738489 112745810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3554 171 381 Core DNA Replication Machinery Family AT1G08840 27.488 3.58e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3554 K19036 - gmx:100810545 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3554 3 112738489 112745810 Mal3g3554 3 112738489 112745810 ECH