Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3553 ATGATGGATACATACAAGAAATCACCCTTGAAGCCATGGAAGAAAGGACCAACTAGAGGAAAAGGTGGCCCCCAAAATGCTTCCTGCGAGTATCGAGGCGTTCGTCAAAGAACGTGGGGTAAATGGGTTGCCGAAATAAGAGAGCCAAAGAAAAGAACTAGGCTCTGGCTTGGTTCTTTCGCCACTGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCAAGGAGGCTCTATGGACCAGATGCATACCTTAATCTTCCACACTTGCAAACACACTCCAATTCAACTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCAAAGAATTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAGCCTAGCGTTCATTTGATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGTTACAAGTCAATCATCACTTTCTAGTTCATCAAACGATCCAAAGGCAGAAGAAATACAGAAAGTAGACAGCAAGAAGAATCATGCAGAAGATCCTTCGCCAAAGGGAAAAGATGTTCAAACATCGGCGAATAAGATGATTGGAGATCTTCAGGAGGAGAAACCACAGATAGACCTAAATGAGTTTCTTCAACAGCTGGGAATACTGAAAGAAGAAACACACTCAGAACAAACAGAGAGTTCAGGAAGTTCAACAGTGCATGAAGCTGTGCCAAGAGATGATAATGATCAGTTGGGAATATTTTCTGACATGAGTGTTAATTGGGAGACATTGATCGAGATGCATGAATTTGCAGGTATTCAGGAATCAGAAGCCACCCATCTTGAAGCATATGACCCGAATGACCACCTTAATTTCTCAACTTCCATTTGGAACTTTTAA 870 0.4172 MMDTYKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQTHSNSTIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVVTSQSSLSSSSNDPKAEEIQKVDSKKNHAEDPSPKGKDVQTSANKMIGDLQEEKPQIDLNEFLQQLGILKEETHSEQTESSGSSTVHEAVPRDDNDQLGIFSDMSVNWETLIEMHEFAGIQESEATHLEAYDPNDHLNFSTSIWNF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3553 289 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 MobiDBLite consensus disorder prediction 216 241 - -
Mal3g3553 289 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 MobiDBLite consensus disorder prediction 1 28 - -
Mal3g3553 289 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Mal3g3553 289 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Mal3g3553 289 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Mal3g3553 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 286 - -
Mal3g3553 289 MobiDBLite consensus disorder prediction 146 184 - -
Mal3g3553 289 MobiDBLite consensus disorder prediction 159 178 - -
Mal3g3553 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 2 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3553 Mal-Chr3 112736917 112737786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3553 6 289 AP2-EREBP Transcription Factor Family AT3G57600 51.568 2.98e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g3553 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3553 - - gmx:100801311 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3553 3 112736917 112737786 Mal3g3553 3 112736917 112737786 ECH