Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3550 ATGTGCTGTGAATTGGAGGGTTTAAAGCCTGCACCGTCTCCTACTTTGACACGCAATCCGCAAGCACGAAACCACACAATGAATCACTTAACTGTTGGTACTGAAGATTCTTTTGCGAGTTTGCTTGAGCTAGCTGCTAATAATGATGTTGAAGGGTTCAAACGGTTGATCGAGTATGATCCTACTTCGGTGGATGAGGTTGGATTATGGTATGGTCGTCGCAAGGGATCAAAGCAGATGGTCAACGAGCAAAGGACGCCTTTGATGGTTGCGGCTACTTATGGTAGCATTGATGTTATGAAATTGATTATTTCTCTATCTGATGTTGATATCAACAGGCCTTATGGTCTTGACAAGAGCACTGCTCTTCACTGTGCTGCTTTGGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCAGCAGGGGCTGATCCTAATTCCGTGGATGCTAACGGGGATCATCCGTTAGATGTTATTGTTTATCCTCCTAAGATGGAATTTGTGAAAAACAGTCTTGAAGAGCTACTTAAAATTGATGATCGTAGTGCTGGTTGTAATCTTAGGGTGATTACAAACTCGCTTAATTCTTATTCTCCTCCTTTGTCGGCTTCACCTGAGAACGGGTCTCCTTCTCCACCGCCGGATCTCCTGTTGAAGTTAAAGTCAATTGATGTCCCTCTTTCTCCTGCTGGATCTGAGAAAAAAGAATATCCTGTTGATCCATCCCTTCCTGACATCAAAAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCCCGTGCTTATTCCCATGACTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGAAGAAGGGACCCGAGGAAGTATCATTACAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAGTATGCTCATGGAGTTTTCGAGTGCTGGCTGCATCCTGCACAATATAGAACCCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGAGTCTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTGTATGTTTCAACTGGTTCTGCGGTTCCCTCTCCTCGGTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCACCTTCCTCAATGTCTGTCATGTCTCCTTCACCATTCACTCCACCCATGTCACCTTCTGGCAATGGCATTTCACACAACTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCTGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCTCTCAACGCTAGAGATATTCATATGGATGATTTTGAGTTGTTGTCTGATTATGATCAACAGCAACAACTCCTTAAGGAGTTGGCATGTCTCTCTCCACGTCATATAAATTCTAACAGTCTTAGCCGTTCTGGTCGAATGAAGCCATTGAATCCATCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACTGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGACCATGTTGTCACCCGTGAATACAAATTTTTCTCCTAAAAATGTTGATCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATCTCTCCGATGGGCTCAAGGATGTCAATGCTGGCTCAACGCGACAAGCAGCAACAATTTCGCAGCCTAAGCTTCCGTGAGCACGGCTCTAACTCTATGCTTGCAGCTGGTGGCTCAGTCAATAATTCTTGGTCGAAATGGGAATCCCCCAATGGTAAGTTGGATTGGGCTCACAATGCGGATGAAGTTGGTAAGCTCCGTAGATCATCTTCATTTGAGCTTGGAAACAACGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACTGATATTAAAGAGAAATTGGCTACTTCTATCTCAGGTGCTGCGCCAGCTGGATCGTCCGGTGAGGGATTGAATATGAGCACACAAATGGAGTCTGTTGATCATGCTGTATTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTAA 2187 0.454 MCCELEGLKPAPSPTLTRNPQARNHTMNHLTVGTEDSFASLLELAANNDVEGFKRLIEYDPTSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDVMKLIISLSDVDINRPYGLDKSTALHCAALGGAENAVDAVKLLLAAGADPNSVDANGDHPLDVIVYPPKMEFVKNSLEELLKIDDRSAGCNLRVITNSLNSYSPPLSASPENGSPSPPPDLLLKLKSIDVPLSPAGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDDFELLSDYDQQQQLLKELACLSPRHINSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLTSTVFSPTHKSAVFNQFQQQQTMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNVEPISPMGSRMSMLAQRDKQQQFRSLSFREHGSNSMLAAGGSVNNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTDIKEKLATSISGAAPAGSSGEGLNMSTQMESVDHAVLGTWLEQMQLDHLVAQQN* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3550 728 ProSiteProfiles Ankyrin repeat profile. 118 153 IPR002110 GO:0005515
Mal3g3550 728 PANTHER UNKEMPT FAMILY MEMBER 27 725 IPR045234 -
Mal3g3550 728 ProSiteProfiles Zinc finger C3H1-type profile. 303 325 IPR000571 GO:0046872
Mal3g3550 728 SMART c3hfinal6 298 324 IPR000571 GO:0046872
Mal3g3550 728 SMART c3hfinal6 333 356 IPR000571 GO:0046872
Mal3g3550 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 323 IPR000571 GO:0046872
Mal3g3550 728 ProSiteProfiles Ankyrin repeat region circular profile. 118 152 - -
Mal3g3550 728 Gene3D - 15 206 IPR036770 -
Mal3g3550 728 Gene3D - 299 361 - -
Mal3g3550 728 SUPERFAMILY Ankyrin repeat 38 171 IPR036770 -
Mal3g3550 728 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 27 725 - -
Mal3g3550 728 SMART ANK_2a 36 66 IPR002110 GO:0005515
Mal3g3550 728 SMART ANK_2a 83 113 IPR002110 GO:0005515
Mal3g3550 728 SMART ANK_2a 118 150 IPR002110 GO:0005515
Mal3g3550 728 Pfam Ankyrin repeats (3 copies) 44 152 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3550 Mal-Chr3 112688633 112690819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3550 35 721 C2H2 Transcription Factor Family AT5G12850 53.607 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal3g3550 Ank_2 1.3e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3550 - - ccaj:109796653 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3550 3 112688633 112690819 Mal3g3550 3 112688633 112690819 ECH