Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3534 ATGGGGACTCCAGAATTCCCAGATCTAGGCAAGCATTGTTCTGTTTCTGATTGCAGACTCATCGATTTCTTGCCCTTCACTTGTGATCGTTGCAATCAGGTATATTGTTTGGACCACAGAAGTTATATTAAGCATAATTGTACAAAACCCAACAAACAAGATGTTACTGTTGTTATATGTCCACTTTGTGCGAAAGGCGTTCGCCTAATTCCAGACCGAGATCCAAACATAGTTTGGGAGTCTCATGTCAACACAGATTGTGACCCATCAAATTATGAAAAAGTCACAAAGAAGAAAAAGTGTCCTGCCCCAGGATGCAGAGAGACCTTAGTATTCTCAAACACAATCAAGTGTAGGGACTGTGAGGTTGACCATTGTTTGAAGCACAGGTTTGGAGCTGATCACAAATGTTCTGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATATGAGCAGTAGTAAAGAAGAGTCAAAACCCAACTTAACTTCAACCACATCATCTAAATGGACTTCAAGCCTTCTTGATCTGGCTTCTAAATTGAGTGGGATAGGACAGAGTAGTAGCAGCGGTAGTAGAAATAATCAATTGGAGAAGTGTCCACTATGTGATGCTAAGTTTTCCTCGGCCACTAGTTTGGTGGATCATGCGAAAAAAGTTCATCAAAGGAGTGGCGGCAACCAATATGGGGCAAAGAAGGTGTCGATTTCTGCATGTCCTAAGTGTAGTAAAGGTTTTCTGGACCCGGTTTCCCTTGTGGAACATGTTGATAGAGATCATGGTGGTAGTTCTTGA 807 0.4126 MGTPEFPDLGKHCSVSDCRLIDFLPFTCDRCNQVYCLDHRSYIKHNCTKPNKQDVTVVICPLCAKGVRLIPDRDPNIVWESHVNTDCDPSNYEKVTKKKKCPAPGCRETLVFSNTIKCRDCEVDHCLKHRFGADHKCSGPKKLETSFSFMSLLNMSSSKEESKPNLTSTTSSKWTSSLLDLASKLSGIGQSSSSGSRNNQLEKCPLCDAKFSSATSLVDHAKKVHQRSGGNQYGAKKVSISACPKCSKGFLDPVSLVEHVDRDHGGSS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3534 268 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Mal3g3534 268 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Mal3g3534 268 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Mal3g3534 268 ProSitePatterns Zinc finger C2H2 type domain signature. 243 264 IPR013087 -
Mal3g3534 268 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 185 - -
Mal3g3534 268 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 186 268 - -
Mal3g3534 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Mal3g3534 268 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Mal3g3534 268 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Mal3g3534 268 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Mal3g3534 268 SMART c2h2final6 202 225 IPR013087 -
Mal3g3534 268 SMART c2h2final6 241 264 IPR013087 -
Mal3g3534 268 Gene3D Classic Zinc Finger 182 268 - -
Mal3g3534 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 225 IPR013087 -
Mal3g3534 268 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Mal3g3534 268 ProSitePatterns Zinc finger C2H2 type domain signature. 204 225 IPR013087 -
Mal3g3534 268 Gene3D - 86 172 IPR035896 -
Mal3g3534 268 Gene3D - 2 58 IPR035896 -
Mal3g3534 268 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 185 - -
Mal3g3534 268 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 186 268 - -
Mal3g3534 268 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3534 Mal-Chr3 112508514 112510323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3534 1 268 C2H2 Transcription Factor Family AT2G41835 58.803 5.74e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g3534 zf-AN1 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3534 - - cam:101511743 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3534 3 112508514 112510323 Mal3g3534 3 112508514 112510323 ECH
Mal3g3534 3 112508514 112510323 Mal1g3795 1 75257000 75259266 PCT