Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3488 ATGTCAAAGTTGTTTGAAGGAGTAAATATGTTCATGTCGCGAACCCTAATTCCGCCTGAAGAGTTCGAAGCAGTTCATAAGGCTGTTGAAGATAATGGAGCTCGAATTCACTATCGTTTTGATCCATCATACAACGGTGACAACGATTATCATATAATTAATTGCAGCAAACACAATAGATTTAAAGATCTAAAGTCGAATGGCTGCAAGATTATCGGTTATAGATGTGTTCTTCAGTGTGCTAAAGAAGGAAGGCCTCTGCCTAAACAATCCTTCACTTGCTGCTTTACCATGGATGCTGTCAAAATATTTGCCTCTGACTTTGATGCGGATCTAAAGGTTAAGATAGACGAATTAGTGACTGAAATGGGGGGAACTCTACACACTAAACCGTCATCAGATATAAACTTTGTCATAGCGAAAAATGTTTTGGCTCCAGAGTACAAGTGGGCTTTGAATGTCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAAATGAGCATCAAGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTTTGGGTTAAAGATCTGCGTGACTGGATACCGAGCAGATAAGCGCAAAGAGATGGAAAAGCTTATTTTACAAAATGGTGGAAAATTCTCTGCAGACCTGACAAAAAATATTTGTGTTCTTGACTGTTCTTACGCTCCTGAAGGTGATAAGCATGAGACTGCAAAACATTGGGGTGATATTCATATTGTGACAATGAAATGGTTTGATGAATCTATTGCTCAAAAAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTATCGCCGCGTAAGGTGACTAGGAACTCAACAGCGCAACATAGCCAGGAAAAGGATACTGGGAAAATGCAATCTGGTTCATCCTCAAGAGCCGCGAGTTCAAATATGTTAGTTGATTGTGCCAAGTCTTTAAATGTAGATCCAGCCGCTACACAGTCAAAACATATGTTGTCTGTTTCAAATGTTCCATTATTTGTTAAAGAGGCAGATGCTGAAGTACCTCCATTACAGACCAGCAATGAATTGAACTTTAATGGGGCTGTGGCCAATGATTCTGAATCTGATGACAATAACCGGTATTTAGCAGACTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGGGGAAGCTAATTAATATGGTGCGTAATGGTGGAGGCTCCCATTGCTTGTCTTTAAATGATAAGTTGACACACATAGTAATTGGGAATCCGACAGAAATGGAAAGGAAGGATGTAGCGAGAACTGTTGCTCTAGGTGTCGGTTACGTTGTTAAAACCTCATGGCTTGACGATTGTGATCGCGAAAAGAAACAAGTCCCTGTTCTACAATGGTATAGTGCATTTGATATTGTTTTTCCAGAAGGCAAAGCATTGGGTAGAACTGTGTCGCAAACTCAACTTCCTGATGAAAAATTGTGGGTACAAAAGATTACATGTGACTCCAGTGTACATGTGAAGTCACTTACTTCAATCACAGATCTGGACACGGATCTTGACGAATTAGAAGGTTTAAAAAAGAAGAATCTAGAAAAGGAGGAGTTGACAAAGGCTCATGTTGACTTAGCAAAAGGGCTGGTTGATTATGCTGCTTCTCGTAGGCTAGCTCGCAGGCGCGTTCGCTTCGAGATTGAGGAATTAAAGAGACGACAAAAGGAGATGGAGATGGAATATGTAAGAATCGACGATGACTTGAGGGCAAAGTTAGGTCCTCTTTATGGATACAAAAAGCCTATAAATGAGTTGAAGATTGAGGCTCTTAAGCTTTATGAGGAGGATCGTAAGTCTAAGGGAATAGTTGCCATCTCTAAGAATCATGAGATGAGATTTAAGAAAGCAATGGAGGCGTTTGGTGACATTGCAAAAGAGAGTTGTCGCCGTAACTTTGTTACGTACTTGAATGATCCGGTTAGAAAACAAAACATTAGGAACCACTTCAAGGGGATGATTAACTTAGCGTGTGAAATGTCTGAGGGAGTTTCTGATGAGACACACCTTCCATATTCAAAGAGGGCACGAAGTGGTAATAATCTACCTGAAGAACAGGAGGTGCACAATGGGACTGCTAAGAAAATTAAACATGAACTGTGA 2136 0.4022 MSKLFEGVNMFMSRTLIPPEEFEAVHKAVEDNGARIHYRFDPSYNGDNDYHIINCSKHNRFKDLKSNGCKIIGYRCVLQCAKEGRPLPKQSFTCCFTMDAVKIFASDFDADLKVKIDELVTEMGGTLHTKPSSDINFVIAKNVLAPEYKWALNVLKKPIVTYEWLKQCSNEHQVVPQESYKVLPFFGLKICVTGYRADKRKEMEKLILQNGGKFSADLTKNICVLDCSYAPEGDKHETAKHWGDIHIVTMKWFDESIAQKACLNEESYPVQSGSLSPRKVTRNSTAQHSQEKDTGKMQSGSSSRAASSNMLVDCAKSLNVDPAATQSKHMLSVSNVPLFVKEADAEVPPLQTSNELNFNGAVANDSESDDNNRYLADCRISLVGFEASEMGKLINMVRNGGGSHCLSLNDKLTHIVIGNPTEMERKDVARTVALGVGYVVKTSWLDDCDREKKQVPVLQWYSAFDIVFPEGKALGRTVSQTQLPDEKLWVQKITCDSSVHVKSLTSITDLDTDLDELEGLKKKNLEKEELTKAHVDLAKGLVDYAASRRLARRRVRFEIEELKRRQKEMEMEYVRIDDDLRAKLGPLYGYKKPINELKIEALKLYEEDRKSKGIVAISKNHEMRFKKAMEAFGDIAKESCRRNFVTYLNDPVRKQNIRNHFKGMINLACEMSEGVSDETHLPYSKRARSGNNLPEEQEVHNGTAKKIKHEL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3488 711 ProSiteProfiles BRCT domain profile. 180 270 IPR001357 -
Mal3g3488 711 MobiDBLite consensus disorder prediction 683 711 - -
Mal3g3488 711 SMART BRCT_7 182 260 IPR001357 -
Mal3g3488 711 SMART BRCT_7 2 84 IPR001357 -
Mal3g3488 711 SMART BRCT_7 372 452 IPR001357 -
Mal3g3488 711 SMART BRCT_7 96 172 IPR001357 -
Mal3g3488 711 Coils Coil 552 579 - -
Mal3g3488 711 ProSiteProfiles BRCT domain profile. 115 182 IPR001357 -
Mal3g3488 711 Gene3D BRCT domain 19 92 IPR036420 -
Mal3g3488 711 MobiDBLite consensus disorder prediction 269 304 - -
Mal3g3488 711 Gene3D BRCT domain 184 274 IPR036420 -
Mal3g3488 711 SUPERFAMILY BRCT domain 58 181 IPR036420 -
Mal3g3488 711 ProSiteProfiles BRCT domain profile. 1 94 IPR001357 -
Mal3g3488 711 Pfam BRCA1 C Terminus (BRCT) domain 114 168 IPR001357 -
Mal3g3488 711 Gene3D BRCT domain 357 462 IPR036420 -
Mal3g3488 711 Gene3D BRCT domain 96 183 IPR036420 -
Mal3g3488 711 SUPERFAMILY BRCT domain 184 271 IPR036420 -
Mal3g3488 711 Pfam twin BRCT domain 188 252 IPR001357 -
Mal3g3488 711 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 5 522 - -
Mal3g3488 711 CDD BRCT 101 168 - -
Mal3g3488 711 SUPERFAMILY BRCT domain 366 457 IPR036420 -
Mal3g3488 711 CDD BRCT_TopBP1_rpt2_like 184 260 - -
Mal3g3488 711 ProSiteProfiles BRCT domain profile. 370 462 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3488 Mal-Chr3 111944953 111951951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3488 2 473 Core DNA Replication Machinery Family AT1G77320 50.316 1.50e-148 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3488 K10728 - gmx:100804966 664.84