Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3487 ATGTCGAAGTTGTTTGAAGGGGTAAATATGTTCATGTCGCAAATCCTAATTCCGCCTGAAGAGTTCGACGCGCTTCACAAGGCAGTTGAAGATAACGGCGGCCGGATTCACTACCGTTGTGATCCATCATACAACGGTGCCAAAGATTATCATATAACTTCTTGCAGTAAACGGTATAAATTTAAAGATCTTATGTCTAATGGCTGTAAGATTATCGGTTATAGATGTGTTCTTCAGTGTGCTAAAGAAGGAAGGCCTCTGCCTAAACAAGCCTTCACTTGCTGCTTTACCATGGATGCTGTCAAAATACTTGCCTCTGGCTTTGATGCGGATCAGAAGGTTAAGATAGACGAATTAGTGACTGAAATGGGGGGAGCTCTACACACTAAACCGTCATCGGATATAAACTTTGTCATCGTGAAAAATGTTTTGGCTCCAGAGTACAAGTGGGCTTTGAATGTCCTGAAGAAACCGATAGTTACTTATGAATGGTTAAAGCAATGCTCAAAAGAGCATCAAGTTGTTCCTCAAAATTCATATAAGGTTCTTCCTTTTTATGGGTTAAAGATCTGTGTCACTGGAATCCAAGCAGATAACTGCAAAGATATGGAAAAACTTATTTTACAAAATGGTGGAAAATTCTCTGCAGACCTGACAAAGAATATTTGTGTTCTTGACTGTTCTTACGCTCCTGAAGGTGATAAGCATAAGACGGCAAAACTTTGGGGTGATATTCATATTGTGACAATGCAATGGTTCGATGAATCTATTGCTCAAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTTCTTCACGTAAGGTGACTAGGAACTCAACAGCGCAACATTTCCGGGAAAAGGATATTGGGAAAATGCAATCTTGTTCATCCTCAAGAGCCGCAGATTCAAATATGCCAGTTGATTGCGCCAAGTCTTTAAATGTAGATCCAGCCGCTCCACAGTCAAAACATATGTTGTCTGTTTCAAATGTTCCATTATTTGTTAAAGAGACAGATGCTGAAGCACCTCCAGTGGAGACCAGCACTGAATTGAACTTTGATGGGGCTGTCGCCAATGATTCTGAATCTGATGACAATAACCGGTATTTAGCAGACTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGGGGAAGCTAATTAATATGGTGCGTAAAGGTGGAGGCTCCCATTGCGTGTCTTTAAATGATAAGTTGACACACATAGTAATTGGGAATCCGACAAAAATGGAAAGGAAGGATGTAGCGAGAACTGTTGCTCTAGGTGTCGATTACGTTGTTAAAACCTCATGGCTTGACGATTGTGATCGCGAAAAAAAACAAGTCCCTGTTCTACAACGGTACAGTGCATCTGATATTGTTTTTCCAAAAGGTAAAGCATTGGGTAGAACTGTGTCACAAACTCAACTTCCCGATGAAAAATTGAGGGTACAAAAGATTACACGTGACTCCAATGTACATGTGAAGTCACTTACTTCAATCACAGATCTGGACACGGATCTTGACGAATTAGAAGAAGGTTTAAAAAAGAAGAATCTAGAAAAGGAGGAGTTGACAAAGGCTCATGTTGACTTAGCACAAGGGCTGGTTGATTATGCTGCTTCTCGTAGGCTAGCTCGCACGCGCGTTCGCTTCGAGATTGAAGAATTAAAGAGACGACAAAAGGAGATGGAGATGGAATATGTAAGAATCGACGATGACTTGAGGGCAAAGTTAGGTCCTCTTTATGGATACAAAAAGCCTATAAATGAGTTGAAGATTGAGGCTCTTAAGCTTTATGAGGAGGATCGTAAGTCTAAGGGAATAGTTGCCATCTCTAAGAATCGTGAGATGGGATTTAAGAAAGCAATGGAGGCGTTTGGTGACATTGCAAAAGAGAGTTGTCGCCGTAACTTTGTTACGTACTTGAATGATCCGGTTAGGAAACAAGACATTCAGAACCACTTCAAGGGGATGATTAACTTTGCGTGTGAAATGTCTGAGGGAGTTTCTGATGAGACACACCTTCCATATTCAAAGAGGGCACGAAGTGGTAATAATCAACCTGAAGAACAGAAGGTGCACAATGGGACTGCTAAGAAAATTAAACATGAAGTGTGA 2130 0.4094 MSKLFEGVNMFMSQILIPPEEFDALHKAVEDNGGRIHYRCDPSYNGAKDYHITSCSKRYKFKDLMSNGCKIIGYRCVLQCAKEGRPLPKQAFTCCFTMDAVKILASGFDADQKVKIDELVTEMGGALHTKPSSDINFVIVKNVLAPEYKWALNVLKKPIVTYEWLKQCSKEHQVVPQNSYKVLPFYGLKICVTGIQADNCKDMEKLILQNGGKFSADLTKNICVLDCSYAPEGDKHKTAKLWGDIHIVTMQWFDESIAQRACLNEESYPVQSSSRKVTRNSTAQHFREKDIGKMQSCSSSRAADSNMPVDCAKSLNVDPAAPQSKHMLSVSNVPLFVKETDAEAPPVETSTELNFDGAVANDSESDDNNRYLADCRISLVGFEASEMGKLINMVRKGGGSHCVSLNDKLTHIVIGNPTKMERKDVARTVALGVDYVVKTSWLDDCDREKKQVPVLQRYSASDIVFPKGKALGRTVSQTQLPDEKLRVQKITRDSNVHVKSLTSITDLDTDLDELEEGLKKKNLEKEELTKAHVDLAQGLVDYAASRRLARTRVRFEIEELKRRQKEMEMEYVRIDDDLRAKLGPLYGYKKPINELKIEALKLYEEDRKSKGIVAISKNREMGFKKAMEAFGDIAKESCRRNFVTYLNDPVRKQDIQNHFKGMINFACEMSEGVSDETHLPYSKRARSGNNQPEEQKVHNGTAKKIKHEV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3487 709 SUPERFAMILY BRCT domain 184 271 IPR036420 -
Mal3g3487 709 ProSiteProfiles BRCT domain profile. 367 459 IPR001357 -
Mal3g3487 709 SMART BRCT_7 369 449 IPR001357 -
Mal3g3487 709 SMART BRCT_7 2 84 IPR001357 -
Mal3g3487 709 SMART BRCT_7 182 260 IPR001357 -
Mal3g3487 709 SMART BRCT_7 96 172 IPR001357 -
Mal3g3487 709 MobiDBLite consensus disorder prediction 680 709 - -
Mal3g3487 709 Pfam twin BRCT domain 188 252 IPR001357 -
Mal3g3487 709 Coils Coil 504 531 - -
Mal3g3487 709 SUPERFAMILY BRCT domain 58 181 IPR036420 -
Mal3g3487 709 Gene3D BRCT domain 101 183 IPR036420 -
Mal3g3487 709 ProSiteProfiles BRCT domain profile. 103 182 IPR001357 -
Mal3g3487 709 Gene3D BRCT domain 184 276 IPR036420 -
Mal3g3487 709 ProSiteProfiles BRCT domain profile. 1 94 IPR001357 -
Mal3g3487 709 ProSiteProfiles BRCT domain profile. 180 270 IPR001357 -
Mal3g3487 709 Coils Coil 550 577 - -
Mal3g3487 709 Gene3D BRCT domain 2 100 IPR036420 -
Mal3g3487 709 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 5 525 - -
Mal3g3487 709 Gene3D BRCT domain 356 460 IPR036420 -
Mal3g3487 709 SUPERFAMILY BRCT domain 363 453 IPR036420 -
Mal3g3487 709 CDD BRCT 101 168 - -
Mal3g3487 709 CDD BRCT_TopBP1_rpt2_like 184 260 - -
Mal3g3487 709 Pfam BRCA1 C Terminus (BRCT) domain 106 168 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3487 Mal-Chr3 111927919 111934109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3487 2 470 Core DNA Replication Machinery Family AT1G77320 50.210 4.59e-148 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3487 K10728 - gmx:100804966 657.136