Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3404 ATGTCCCTTGAAGACTCACTAAGATCTCTTTCTTTAGATTACTTAAACCTTCTCATCAACGGACAAGCCTTCAGCGACGTCGTTTTCAGCGTTGAAGGACGTTTAGTTCACGCACACAGATGCATCTTAGCAGCAAGAAGTCTGTTCTTCAGAAAATTCTTTTGTGGGCCAGACCCACCTTCTGGACTCGACCCATCAGGAAACCGAGTCAACTCGTCCGGTTCAGCTAGGTCTGGTGTTATACCTGTTAACTCGGTTGGTTATGAAGTTTTCTTGTTGATGCTTCAGTTTCTCTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAATTGTGGTGACCGTGGTTGTTGGCATACACATTGTACCTCAGCCGTTGATCTTGCTCTTGATACTCTCTCTGCCGCTAGATACTTTGGAGTTGAACAGCTTGCATTACTCACTCAGAAACAACTTGCGAGTATGGTGGAAAAAGCTTCCATTGAAGATGTAATGAAAGTGTTACTAGCATCAAGAAAACAAGACATGCATCAACTATGGACCACATGTTCCCACCTTGTAGCAAAATCAGGTCTTCCCCCAGAAGTACTAGCAAAACACCTCCCTATTGATATCATAGCCAAAATCGAAGAGCTCCGCATGAAAACCTCCTTATCACGCCGCTCCTTAATGCCTCACCACCACCACCCTCACCACCACGACCACCTTACAGCTGCAGCTGACCTAGAAGACCAAAAAATCCGTCGAATGAGACGTGCCCTTGACTCCTCAGACGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGTCTTAACCTCGACGAAGCATTAGCATTACCTTATGCTGTTGAGAATTGCAGTAGAGAAGTGGTGAAAGCCTTATTGGAACTCGGTGCAGCCGATGTTAACTTCCCGGCTGGTCCAACCGGTAAAACTCCGCTTCACATTGCAGCCGAGATGGTCTCTCCAGACATGGTGGCTGTGCTGCTTGACCACCACGCCGACCCGAATGTGAGAACTGTGGATGGTGTTACACCTTTGGACATTCTAAGAACCCTAACTTCAGATTTTCTATTCAAAGGTGCTGTTCCTGGATTAACTCACATTGAACCAAACAAACTAAGGCTGTGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTATGTCAAGGGAAGAAGGGAATAACAATAATAATAACAATAACAATGCAAACAATACAGCTTCTTCAGCATCAAATATGTATCCTCATCATAATATGAATGAAGATCATCACCATAGCCACAACAACAATAACATGGATTCAAGGTTGGTGTATCTTAACCTTGGTGCCAATACTCAAATGAGTACTTCCAGGTTGGATTCTGGTGATGATGATAATAGTCACAGGGAAGCTATCAACAACTCCATGTATCATCATCACTCTCATGGTCATGACTACTAA 1452 0.4408 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRVNSSGSARSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKTSLSRRSLMPHHHHPHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNNNNNNANNTASSASNMYPHHNMNEDHHHSHNNNNMDSRLVYLNLGANTQMSTSRLDSGDDDNSHREAINNSMYHHHSHGHDY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3404 483 Pfam Domain of unknown function (DUF3420) 195 255 IPR024228 -
Mal3g3404 483 PANTHER REGULATORY PROTEIN NPR5 1 478 - -
Mal3g3404 483 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 478 IPR044284 GO:0099402
Mal3g3404 483 SMART BTB_4 25 160 IPR000210 GO:0005515
Mal3g3404 483 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Mal3g3404 483 MobiDBLite consensus disorder prediction 451 483 - -
Mal3g3404 483 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Mal3g3404 483 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Mal3g3404 483 SUPERFAMILY POZ domain 8 158 IPR011333 -
Mal3g3404 483 MobiDBLite consensus disorder prediction 395 435 - -
Mal3g3404 483 MobiDBLite consensus disorder prediction 395 420 - -
Mal3g3404 483 MobiDBLite consensus disorder prediction 458 483 - -
Mal3g3404 483 CDD BTB_POZ_NPR_plant 8 160 - -
Mal3g3404 483 Gene3D Potassium Channel Kv1.1; Chain A 4 193 IPR011333 -
Mal3g3404 483 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Mal3g3404 483 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Mal3g3404 483 Gene3D - 238 361 IPR036770 -
Mal3g3404 483 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Mal3g3404 483 SMART ANK_2a 313 342 IPR002110 GO:0005515
Mal3g3404 483 SMART ANK_2a 278 308 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3404 Mal-Chr3 110857225 110859933 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mal3g3404 BTB 1.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3404 K14508 - gmx:100816086 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3404 3 110857225 110859933 Mal3g3404 3 110857225 110859933 ECH