Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3359 ATGGATTCACAAGAACCCTTCTCCCAATCGGAAACCTACCTCGCCGGCTTCATAATGGCGAACATCGTCGGCACAAAATACTACTCCGGCACCATCACCGGCCGCGAAATCCTCGGCTTAATCCGTGAACCCTTAAACCCTTACGACTCCAACGCCATCAAAGTTCTCAACACTCAATCCCTTCAGGTCGGTCACATCGAACGCTCCGTCGCCGCCGTTCTCGCTCCTCTCATCGACGCTTCAATCATCCACGTTGAAGCAATTGTTCAAACCAACACTCGCTCTAATAATACCAAATTCCGTGTTCCGTGTCAGATTCATGTTTTCGCTCATTTTTCTTCTTTTGATGCTGTTCATGACGCTTTTAATGCTTCTAATGTTCATTTCATTTCGTATAATGATCCTTCTTTTACTCTCTCTCACTCCGCCGCCGTTAAAGAAACCCGCGCTGATGATTCTGCAACCGTAACAACCACCGGTAATAATAAAAACCTAGACCAAATATTTAAACTCGTTCGTGAAAACCTAGCTTCCAAAACCCTAGTTTCTGAACCGTTAAACCCTCCTTCCAATATTATCAAATCAGAACTTCTGCAGCACCAAAAAGAAGCATTGGGATGGCTTTATCATCGCGAAAGTACCGTTGATTTACCTCCGTTTTGGGAGGAGAAAGAGGGGAATTTTGTCAATGTGTTGACGAATTATCAAACTAACGTGCGACCGGAGCCTCTACGCGGAGGGATATTCGCGGATGGGATGGGATTAGGGAAGACTTTAACGTTGTTATCGTTGATTGCTTATGATAAAATGAAAATGAAAAGTGGGAGGAAAAGGGGTAGGAGTGTGGTGGAGACTGAAACAAATGGTACATTGATTGTGTGTCCACCTTCTGTGATGTCGACATGGATAACTCAATTGGAAGAGCATACTAACCGGGGCGCGTTGAAGGTTTATATGTATTATGGTGATAGAAGGACTCAGGATGTTGAGGAGTTGAGAAAGTATGATATTGTGTTGACTACTTATGCTACTTTGGGGGCTGAGTTGCGGTGTTTGGATACTGCTGTGAAGAAATTGGGGTGGAGGAGGATTGTTTTGGATGAAGCGCATACGATTAAGAATGTTAACGCGGGACAAAGTCAAGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACTGGTACACCTATTCAGAGTGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCGTTTTCTATTAAGAGTTATTGGCAAAGCTTGGTTCAACGGCCTCTTAATCAAGGCAAACAGACTGGGATGAGTCGATTACAGGTTTTGATGGCGGCAATGTCATTAAGAAGAACAAAAGACACTGCATCGCTGGGGCTTCCACCTAAGATTGTTGAGACTTGTTATGTTGAACTTTCATTGGAAGAACGTAAACTGTATGATGAGGTTAAAGAGGAAATAAAGTCGCTTATGATGCATCGTAACAGCAATGACAGACTAGTGTCTAGTTATTCCACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTATCGATGGTTCCTTTGGATTTCAAGTCGTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAATTAGGATGCTACAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCTCCAACAGATACTGTTATTACATGTTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTTCAGCGTAGCAATTCCAGTTGTCCACTTTGTCGGCGCTCCCTCTCAGAAGCTGAGTTATTCTCAGCTCCCCCTGAATCTTTCAAGACTGATGATACTACTGAACCGTGCACACCAGAAGTAAGGTCGTCCACCAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCAGTTGTTTTTTCACAATTCCGTAAGATGCTGCTGTTGTTAGAAGAACCTTTGAAAGCAGCTGGCTTTAAAACATTGAATCTTGACGGGACAATGAATGCCAAACAAAGGGCCCAAGTCATCGAAAAATTTCAACTCTCTGAAGTTAATGAGCCAATGATTCTGCTTGCAAGTCTCAGAGCTTCAAGTACTGGCATAAATCTTACGGCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAACCCTGCCGTTGAAGAACAAGCAATGGATCGTGTACACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATTGCAAAAAACAGCATTGAAGAGAAGATACTAATGTTGCAGGAGAAGAAGAAAACAATAACAAGCCGAGGATCTGGGAGGAGATCAAAGGATATTGCTGGTATGGGCATTGAAGATCTCCGTTTTGTTTTAGGAGAATAG 2436 0.4224 MDSQEPFSQSETYLAGFIMANIVGTKYYSGTITGREILGLIREPLNPYDSNAIKVLNTQSLQVGHIERSVAAVLAPLIDASIIHVEAIVQTNTRSNNTKFRVPCQIHVFAHFSSFDAVHDAFNASNVHFISYNDPSFTLSHSAAVKETRADDSATVTTTGNNKNLDQIFKLVRENLASKTLVSEPLNPPSNIIKSELLQHQKEALGWLYHRESTVDLPPFWEEKEGNFVNVLTNYQTNVRPEPLRGGIFADGMGLGKTLTLLSLIAYDKMKMKSGRKRGRSVVETETNGTLIVCPPSVMSTWITQLEEHTNRGALKVYMYYGDRRTQDVEELRKYDIVLTTYATLGAELRCLDTAVKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQSGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGMSRLQVLMAAMSLRRTKDTASLGLPPKIVETCYVELSLEERKLYDEVKEEIKSLMMHRNSNDRLVSSYSTILSMILRLRQICADLSMVPLDFKSCLFSSTDIEDVSKNPELLQTLIRMLQDGEDFDCPICLSPPTDTVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSEAELFSAPPESFKTDDTTEPCTPEVRSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLNLDGTMNAKQRAQVIEKFQLSEVNEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKTITSRGSGRRSKDIAGMGIEDLRFVLGE* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3359 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 416 IPR014001 -
Mal3g3359 811 SMART ring_2 566 604 IPR001841 -
Mal3g3359 811 CDD SF2_C_SNF 637 766 - -
Mal3g3359 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 615 IPR013083 -
Mal3g3359 811 Gene3D - 229 455 IPR038718 -
Mal3g3359 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 642 806 IPR001650 -
Mal3g3359 811 SMART HIRAN_2 15 112 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal3g3359 811 CDD RING-HC_HLTF 565 605 - -
Mal3g3359 811 Pfam Helicase conserved C-terminal domain 639 755 IPR001650 -
Mal3g3359 811 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 276 799 - -
Mal3g3359 811 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 10 268 - -
Mal3g3359 811 SUPERFAMILY RING/U-box 551 610 - -
Mal3g3359 811 SMART helicmild6 670 755 IPR001650 -
Mal3g3359 811 ProSitePatterns Zinc finger RING-type signature. 581 590 IPR017907 -
Mal3g3359 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 451 IPR027417 -
Mal3g3359 811 SMART ultradead3 193 423 IPR014001 -
Mal3g3359 811 Pfam SNF2-related domain 200 526 IPR000330 GO:0005524|GO:0140658
Mal3g3359 811 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 276 799 - -
Mal3g3359 811 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 10 268 - -
Mal3g3359 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 810 IPR027417 -
Mal3g3359 811 Pfam Ring finger domain 565 605 IPR001841 -
Mal3g3359 811 Pfam HIRAN domain 19 105 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal3g3359 811 ProSiteProfiles Zinc finger RING-type profile. 566 605 IPR001841 -
Mal3g3359 811 Gene3D - 7 128 - -
Mal3g3359 811 Gene3D - 464 805 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3359 Mal-Chr3 110120202 110124921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3359 10 805 RAD5 or RAD16-like Gene Family AT5G05130 58.115 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g3359 SNF2_N 4.3e-75 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3359 K15711 - vvi:100263696 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3359 3 110120202 110124921 Mal3g3359 3 110120202 110124921 ECH