Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3358 ATGAAGTCAGGTTCACTCGATCAGTGGAGGAGTTACTTTCGATCATCGAATTCAGATATATTTGACATAATTGACCATGCTATTGTGGTTGCTGCTTCCGATTGTCCAAAGGAGTTTAAGTCTAGAAGAGATGGAATTGCTGAGAAGTTGTTTTCTGTTATGCTGAATCGTTGTAAGGAGTGTGAGAAAGTTGAATTGCCTGTGGCTAATGATGACAATGATGGAGTTTGCAAGAGAAGTTCTGTTGTTCAAGATGGTGCTAGCAAAGAGAGTAAGGTGGATAATGGAGTGATGGATGCTAACCCTATTAGCAATTACAGCTTTGGAGAAGCTGAAGCTTTAACTGATGAACTTGAACAAGCATCACAATTTGTTGATGAGGTTTTGAGGATCAAAGAGATTCTCAATAACTATGAGAATGAGTCTGACTCAGTGCTGTTTGAGTCTCTGAGGAGGCTTCAACTGATGCATCTCTCTGTGGATCTTCTGAAGTCAACTGAGATTGGAAAGGCTGTCAATTATCTGAGAAAGCATGGATCGAAGGATATCTGTCAACTAGCGCGGACTCTCATCAATGGATGGAAAGAACTGGTTGATGCGTGGGTGAAGGCGGAGAAAGCAACCGCACCTGTTGCAGCTTCAGAAGAAGGCACACCGGATTCGATAAATCCATCTGTTGTTGAGAATGTAGAAGAGGAAGAAGGAGGACTTCCATCACCTCCTTTGGACGAAGGGGCTTTCTTTGTTGCCCCAACCGGTACAATGGAACTCTCACAGTTCTTCGATGGCATGGATGATGATGGAAATCTTCGAAAGAGTGCACCATTCAACAAGAACCGTGACAGCGGAAGAAAGCCAGCTGTAGGCACTCAAACTAAGGACAAGAGGAATTTGCTGGCATGTAATGAAACAGCCAGCACTGCCAAGGACAATAAGAATCAGCAAATGAAGAAGAATGAGGCTGCGGTGAGGCTTAATAAACCGATGGCTGCTGATACTGGTCGTGGAAGGCCGCTAAACTCGAACATTCAGCGAAAACTCAATGTCGAGCCGAAGATGCCGCTGAAAATTGAAAACGGTGCTGTCCCTAAGAGGCCTCTCAATGCTCAGCAAGATAAGTCCAAGTGTTCAGATGATGCGGCCAAGCTCGAAGCCACTAAGCGGAGACTTCAAGAGAGTTATCAACAAGCTGAAAATGCCAAGAGGCAAAGGACAGTACAAGTAATGGAAATAAATGATCTTCCAAAGCAAGGGGCTGGCCAACGGAATACACATTTCAAACCCGGAAATCACAATCGGCAAAGGGGTAACGTTCGAAGATAG 1323 0.4452 MKSGSLDQWRSYFRSSNSDIFDIIDHAIVVAASDCPKEFKSRRDGIAEKLFSVMLNRCKECEKVELPVANDDNDGVCKRSSVVQDGASKESKVDNGVMDANPISNYSFGEAEALTDELEQASQFVDEVLRIKEILNNYENESDSVLFESLRRLQLMHLSVDLLKSTEIGKAVNYLRKHGSKDICQLARTLINGWKELVDAWVKAEKATAPVAASEEGTPDSINPSVVENVEEEEGGLPSPPLDEGAFFVAPTGTMELSQFFDGMDDDGNLRKSAPFNKNRDSGRKPAVGTQTKDKRNLLACNETASTAKDNKNQQMKKNEAAVRLNKPMAADTGRGRPLNSNIQRKLNVEPKMPLKIENGAVPKRPLNAQQDKSKCSDDAAKLEATKRRLQESYQQAENAKRQRTVQVMEINDLPKQGAGQRNTHFKPGNHNRQRGNVRR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3358 440 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 117 211 IPR035441 -
Mal3g3358 440 Pfam TFIIS helical bundle-like domain 150 198 IPR017923 -
Mal3g3358 440 Coils Coil 373 407 - -
Mal3g3358 440 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 208 IPR035441 -
Mal3g3358 440 SMART TFS2_5 125 200 IPR003617 GO:0005634
Mal3g3358 440 MobiDBLite consensus disorder prediction 259 295 - -
Mal3g3358 440 MobiDBLite consensus disorder prediction 392 440 - -
Mal3g3358 440 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 438 - -
Mal3g3358 440 CDD TFIIS_I 126 199 - -
Mal3g3358 440 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 438 IPR044805 -
Mal3g3358 440 MobiDBLite consensus disorder prediction 209 243 - -
Mal3g3358 440 ProSiteProfiles TFIIS N-terminal domain profile. 126 201 IPR017923 -
Mal3g3358 440 MobiDBLite consensus disorder prediction 265 279 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mal3g3358 Med26 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3358 - - gmx:100775579 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3358 3 110059579 110062137 Mal3g3358 3 110059579 110062137 ECH