Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal3g3349 | ATGTGTGGAGAGACTGAAAGCTGCACCAGCAACGGTCACCAGAGAGCTGAAGATGTCATCGGCGGCAACGCCAAAGCTATTCAAATCCTCAGAGAACTCATCACATACCCTCGTCTCTTCGCGACTCAGGCAAAAAAGCTTGGTCTTAAGTTTCCAAGAGGGTTGTTGCTCTATGGTCCACCTGGCACCGGAAAGACCAGTTTGGTACGGGCAGTTGTTGAAGAATGTGGGGCAAATTTGACAATTATCAGCCCAAACACTGTTAATAGCGCACATGCTGGCGAAAGTGAGAGAAATCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATACAGCCTTGGGCAAGCCATCGGTTATCTTTATAGATGAACTAGATGGACTTTGTCCTCGCCTAGATTCCAAAAGAGAGCCAGATGTCCGAATTGCTTCCCAACTTTGTATTTTGATGGACTCAAACAGAGCAGCCTCATCTAATCCAGGGGTAGTTGTGGTTGCATCAACTAACAGGGTGGATGCAATTGACCTTGCCCTAAGACGGTATGGACGTTTTGATATTGAAACTGAAGTTACAGTCCCGAATGAAGAGGAACGCCTTCAAATTCTAGAGCTGTATACAAGGAAGATCCCTCGGGATTCACAAGACTTAGAATCTGTTGCTGCATCATGCAACGGATATGTTGGAGCTGACTTGCGGGATCTGTGTCTTGAAGCTGTTAAATCTGCAATCGAGAGGTCCGAAAATGCAAATAAGGATGTTAATGATTCCTGTTTAACGATGGAAGATTGGAAGAATGCAAGGTTACTTGTTCAACCCAGCATAACAAGAGGCATTACAATGGAAATTCCTAAAGTGACTTGGAAAGATATTGGGGGATTGAAAGACGTGAAGACAAAGCTCGAGCAAGCTATTGAGTGGCCTATGAAGCATCCTGCTGCATTTTCAAGATTGGGAATAACCCCTATTCGTGGAATTCTTCTCCATGGACCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCCAATGTTCCTTTCTTTTCCTTGAGTTGTGCAGACTTATATTCAAAGTATGTTGGAGATGGAGAAGGTTTGCTTCGTGAAATATTTCAAAAAGCACGGCTGGCTGGGAAAAGTATAATATTTTTTGATGAAGCTGATGTACTAGCTGGCAAACGGGGTGATGGTTCGAGTGGAGGTGCCGAAGTTGGAGAGAGGCTTTTATCCACTCTGCTTACTGAGATGGATGGCTTAGAAGAAGCTAAAATTTTGTATGTGCCACCATCTGATTTGGAGGGTCGATTTGAGATACTTAAAGTACACACACGTAGGATGAAATTAGGTTGTGATGTTGATCTCAGAAAACTAGCAGAAGATACCGAGCTCTTCACAGGTGCTGAACTAGAGGGAATATGTAAAGCAGCTGGACTGGTAGCTTTAAGGGAAAACAGAGATGCCAGTGTTGTTTATGACCGCCATTTCCAGATCGCAAAGAATTCTTTAAAACCAACATTAACAGCAGAAAATATTGCGTCATTCTCGTCTTTTAGGAGGACCTCATCCCGAGCTTTGCCGAACAGAGGAAATTGA | 1599 | 0.4396 | MCGETESCTSNGHQRAEDVIGGNAKAIQILRELITYPRLFATQAKKLGLKFPRGLLLYGPPGTGKTSLVRAVVEECGANLTIISPNTVNSAHAGESERNLREAFSEASSHTALGKPSVIFIDELDGLCPRLDSKREPDVRIASQLCILMDSNRAASSNPGVVVVASTNRVDAIDLALRRYGRFDIETEVTVPNEEERLQILELYTRKIPRDSQDLESVAASCNGYVGADLRDLCLEAVKSAIERSENANKDVNDSCLTMEDWKNARLLVQPSITRGITMEIPKVTWKDIGGLKDVKTKLEQAIEWPMKHPAAFSRLGITPIRGILLHGPPGCSKTTLAKAAANAANVPFFSLSCADLYSKYVGDGEGLLREIFQKARLAGKSIIFFDEADVLAGKRGDGSSGGAEVGERLLSTLLTEMDGLEEAKILYVPPSDLEGRFEILKVHTRRMKLGCDVDLRKLAEDTELFTGAELEGICKAAGLVALRENRDASVVYDRHFQIAKNSLKPTLTAENIASFSSFRRTSSRALPNRGN* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal3g3349 | 532 | CDD | AAA | 311 | 440 | - | - | |
| Mal3g3349 | 532 | Coils | Coil | 235 | 255 | - | - | |
| Mal3g3349 | 532 | Gene3D | - | 192 | 271 | - | - | |
| Mal3g3349 | 532 | CDD | AAA | 21 | 186 | - | - | |
| Mal3g3349 | 532 | PANTHER | CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B | 17 | 184 | - | - | |
| Mal3g3349 | 532 | Pfam | ATPase family associated with various cellular activities (AAA) | 55 | 189 | IPR003959 | GO:0005524|GO:0016887 | |
| Mal3g3349 | 532 | Pfam | ATPase family associated with various cellular activities (AAA) | 324 | 424 | IPR003959 | GO:0005524|GO:0016887 | |
| Mal3g3349 | 532 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 282 | 489 | IPR027417 | - | |
| Mal3g3349 | 532 | PANTHER | AAA-FAMILY ATPASE | 115 | 503 | - | - | |
| Mal3g3349 | 532 | PANTHER | AAA-FAMILY ATPASE | 17 | 184 | - | - | |
| Mal3g3349 | 532 | Pfam | AAA+ lid domain | 453 | 498 | IPR041569 | - | |
| Mal3g3349 | 532 | Pfam | AAA+ lid domain | 214 | 261 | IPR041569 | - | |
| Mal3g3349 | 532 | Gene3D | - | 272 | 438 | IPR027417 | - | |
| Mal3g3349 | 532 | PANTHER | CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B | 115 | 503 | - | - | |
| Mal3g3349 | 532 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 20 | 260 | IPR027417 | - | |
| Mal3g3349 | 532 | SMART | AAA_5 | 51 | 193 | IPR003593 | - | |
| Mal3g3349 | 532 | SMART | AAA_5 | 320 | 433 | IPR003593 | - | |
| Mal3g3349 | 532 | Gene3D | - | 4 | 190 | IPR027417 | - | |
| Mal3g3349 | 532 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 59 | 78 | - | - | |
| Mal3g3349 | 532 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 395 | 414 | - | - | |
| Mal3g3349 | 532 | Gene3D | - | 439 | 505 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal3g3349 | Mal-Chr3 | 109920727 | 109926848 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal3g3349 | 259 | 507 | Calmodulin-binding Proteins | AT3G56690 | 38.909 | 5.24e-60 | 212 |