Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3338 ATGACACTCTCTCACCAAAATGAAGACTCAGAATTTGCACTCAAAGAAATTGGAAATGAAGGTCTCACTAAACAGATTCTCACAAAAGGTGTCACTTGGCAAACACCATTCTCTGGTGACCAAATTGAAGTTCATTTCAGAGGACAAGTTGAAAATGGACCATCTCTTGAATCAAGTTATGATAAAGGCTCCTCTTTTCATTTCAAATTAGGCCAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCTACGATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTACCTTAGCATATGGGGAAGTAGGTTCTCCACCGTTGATTCCTCCCAATTCAACTCTCATTTTTGAGATTGAAATGTTGTGCTGGAGTACAATAAGGGACTTGACTGGTGATGGAGGAATCATGAAAAAGACAATAAGGGATGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTGTTAGTGAAATATGAAGCAAGGCTTGAGAATGGGATGATTATCAAGTCTGATAAAGGTGTGGAGTTTAATGTAAGTGATGGCTATCTTTGTCCAGCCATGAGTATAGCAGTAAAGTCAATGAGAAAAGGCGAGGTCGCAGAGCTTAGTATGAAATTCTTTTATGGCGTTATTAGTCAAAATTCAAATACAACCATTGAGCTTAACGGTTTATCGGATTCTAATTTAATTAGCATCAAACTTGAGCTTGTATCATGGAAAGTTGTTACTGATATCACTGGAGATAAGAAAATACTAAAGAAAATTAATAAAGCCGGTGAGGGTTTTGATCGTCCTAACGAAGGATCGCATGTGAAAGTGATATATTTATGTAAAGGAGAAGATGGTACAATTGTTGAGAGGAAAGGATCAAAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAAAAAGTGCATGAGGGTCTAGAAAGAGCAATAATGTCAATGAAAAAAGCAGAACAAGCTCTAGTGACTATCAATGCTGAATATTTTTGTGACCATAATAATTTGCAAGGAAACAAGGCCAATAATAAAATCCTTCATTATGAAGTTGAATTAGTTGATTTCACTAAGGAAAAACCATTTTGGAAAATGGAAACTCAAGAGAAACTCGAAGCTTGTGAGCAGAAAAAGCATGACGGGAATCTGCTGTTCAAGGCTCAAAATTTTAGGCGCGCATCCAAGAAATACGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGTGACGGCGAGAAGCATCATGCTAATACCTTGAGATTATCATGTAATTTGAATAATGCTGCTTGTAAACTTAAATTGGAAGAGTTTACTGAAGCTGCTAGGCTTTGCACAAAGGTTCTAGGACAAGATCCCTTAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTTAAAACATCAGATTTGGAGAAAGCTGAAATTGATATTAAAAGAGCTTTGGTTATTGATCCAAATAATAGAGAAATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCTAAAGGAATACAATAAATACGAAGCGGGAATCTTTAGCACAATGGTTTCAAGGATGAATTAG 1581 0.3694 MTLSHQNEDSEFALKEIGNEGLTKQILTKGVTWQTPFSGDQIEVHFRGQVENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPTLAYGEVGSPPLIPPNSTLIFEIEMLCWSTIRDLTGDGGIMKKTIRDGEGWATPKELDEVLVKYEARLENGMIIKSDKGVEFNVSDGYLCPAMSIAVKSMRKGEVAELSMKFFYGVISQNSNTTIELNGLSDSNLISIKLELVSWKVVTDITGDKKILKKINKAGEGFDRPNEGSHVKVIYLCKGEDGTIVERKGSKEEPFEFTTQEEKVHEGLERAIMSMKKAEQALVTINAEYFCDHNNLQGNKANNKILHYEVELVDFTKEKPFWKMETQEKLEACEQKKHDGNLLFKAQNFRRASKKYEKAVKYIEFDHTFSDGEKHHANTLRLSCNLNNAACKLKLEEFTEAARLCTKVLGQDPLNVKALYRRCQAYLKTSDLEKAEIDIKRALVIDPNNREIKLEYKELKLKLKEYNKYEAGIFSTMVSRMN* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3338 526 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 246 - -
Mal3g3338 526 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 242 354 - -
Mal3g3338 526 PANTHER PEPTIDYLPROLYL ISOMERASE 353 526 - -
Mal3g3338 526 SMART tpr_5 460 493 IPR019734 GO:0005515
Mal3g3338 526 SMART tpr_5 377 410 IPR019734 GO:0005515
Mal3g3338 526 SMART tpr_5 426 459 IPR019734 GO:0005515
Mal3g3338 526 Gene3D - 10 129 IPR046357 GO:0003755
Mal3g3338 526 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 39 127 IPR001179 GO:0003755
Mal3g3338 526 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 36 124 IPR001179 GO:0003755
Mal3g3338 526 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 151 220 IPR001179 GO:0003755
Mal3g3338 526 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 268 357 IPR001179 GO:0003755
Mal3g3338 526 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 155 244 IPR001179 GO:0003755
Mal3g3338 526 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Mal3g3338 526 PANTHER PEPTIDYLPROLYL ISOMERASE 6 246 - -
Mal3g3338 526 PANTHER PEPTIDYLPROLYL ISOMERASE 242 354 - -
Mal3g3338 526 Coils Coil 493 513 - -
Mal3g3338 526 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 272 360 IPR001179 GO:0003755
Mal3g3338 526 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 353 526 - -
Mal3g3338 526 Gene3D Tetratricopeptide repeat domain 363 520 IPR011990 GO:0005515
Mal3g3338 526 Gene3D - 130 244 IPR046357 GO:0003755
Mal3g3338 526 SUPERFAMILY FKBP-like 18 126 - -
Mal3g3338 526 SUPERFAMILY FKBP-like 132 213 - -
Mal3g3338 526 Gene3D - 245 362 IPR046357 GO:0003755
Mal3g3338 526 SUPERFAMILY FKBP-like 242 380 - -
Mal3g3338 526 SUPERFAMILY TPR-like 368 515 IPR011990 GO:0005515
Mal3g3338 526 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3338 Mal-Chr3 109644741 109648442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3338 16 525 Calmodulin-binding Proteins AT5G48570 53.385 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3338 - - pvu:PHAVU_001G118200g 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3338 3 109644741 109648442 Mal3g3338 3 109644741 109648442 ECH