Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3335 ATGTGCAACACTGATCCAAAGAAGGGGAAGGAGAAGGTGAATGAAGAATCAGTAGCCAAGTTGAAGATGATGGAGAATCAGAACAATGAGAAGAAGAGAAAAGCCATTGTGATGGAGAAATCCCATGTTGAAACTCAGAGTTCAAAGACTCCACAAAATGCTGCTGCTGCTGCTGAAGAAGAATCAGAAGATTCTTCCAATGAAATTTCTCCATTTCTTCTCTTTGGATTCATTATTGATCCTAGGAGAGATATGCAAACTGCTTACTCATGCACATTTTGTAGCAGAAAATTCACTACTCCACAAGCCCTAGGTGGCCATCAAAATTCTCACAAATCTGAGAAAAGGCTCAAAAGAAGGATCCAAGCTTTTAACAGAGCTTGGATGAATTTCTCAAGTGGTGATCAAGGGATTACCCTAAACACCATTGCTCCATTCAATGGGGGGTGTGGATATCAATGTTATGGATTTAACAATATGATTCATCATGCAGGGTCATCATCATCAAACTTTTATGCTGGGAATTTGTATGGTGCATTGCCAAAGATAGGTAAAGTGAATGTGGCTGATCAAGGCATTGTGAGTCAAAAAGTTACTATGACTCACATTGAAATTGGTTCAGTTTCAAATCAGGGAGGTGCTGCTGGTAATGAAGTTGATCAGGAAGACAAAGAGACTCAAGAGGAGGAAGCATCCAAGATTGACTTGACCCTTAAGCTTTGA 723 0.3997 MCNTDPKKGKEKVNEESVAKLKMMENQNNEKKRKAIVMEKSHVETQSSKTPQNAAAAAEEESEDSSNEISPFLLFGFIIDPRRDMQTAYSCTFCSRKFTTPQALGGHQNSHKSEKRLKRRIQAFNRAWMNFSSGDQGITLNTIAPFNGGCGYQCYGFNNMIHHAGSSSSNFYAGNLYGALPKIGKVNVADQGIVSQKVTMTHIEIGSVSNQGGAAGNEVDQEDKETQEEEASKIDLTLKL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3335 240 MobiDBLite consensus disorder prediction 209 240 - -
Mal3g3335 240 SUPERFAMILY beta-beta-alpha zinc fingers 87 117 IPR036236 -
Mal3g3335 240 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Mal3g3335 240 MobiDBLite consensus disorder prediction 41 55 - -
Mal3g3335 240 Gene3D Classic Zinc Finger 74 134 - -
Mal3g3335 240 Coils Coil 14 41 - -
Mal3g3335 240 MobiDBLite consensus disorder prediction 23 65 - -
Mal3g3335 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Mal3g3335 240 PANTHER ZINC FINGER PROTEIN JAGGED 12 240 IPR045320 GO:0003700
Mal3g3335 240 MobiDBLite consensus disorder prediction 218 240 - -
Mal3g3335 240 PANTHER EXPRESSED PROTEIN 12 240 - -
Mal3g3335 240 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3335 Mal-Chr3 109614306 109615028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3335 78 240 C2H2 Transcription Factor Family AT1G80730 27.907 1.08e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g3335 None None None