Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3333 ATGTCTGAGAGGATTTCCATTGGAAATGCTGAGGACAGAAACCTCAAGCGCAAAATGATGGAGGAGCCAGAGTCAAAATCAGAGAAGGAGGCAAAAACAATGCCACCAACCTCTAAATCTGATGTTGAGAATTTACTGATCATGAGGCTTGGTGCTCCCACCAAGTCCACCTCCAAACCCTTGGAGACTGGTGACCATTCAAGTTCAGCTGAGAACACTGCTGGTGAACCTTTACCTCAGCCAGAAGTGAAGGAATTCTCTTGCACTTACTGTGACAAGAAATTCTCCACTTCGCAAGCTCTTGGAGGACACCAAAACGCTCACAAGCGTGAGCGTAACTTCAAAAAAATGGAAGATAAAAGGAGAGAGGAAGAGATGGATTCATCTCTAAGGTTTAGATCTATTAATCAACCATACCCTTATCCATTTTCAAGCCCTATTCACTATCAAAGCTATTCATATTTCCGAAGTGCTAATTTGCTGAACCCAATTGGCGCCCATGTGAACAATACCTTGCCTTCTTGGCTTGGTTCATCTTCCGGTGGCTATGGAGGGTTGTATACGCCAAATACACCTGCTGCATCCCGGTATGTGATGCAAATGCAAAACTCACCCCTCGCAACACCGCGATTTGGGAGGACTAATTTGTGGGGTGGAGCTCAAGATGCTGCATTGCCAATTCCACAAAGGTCAAACACTTTGGGTTTAGGACTTTTTGCTCAAGGTAATCAAACCCCTCCATCTGCTGAGGGTCCAGAAAGAAATTTCATTGATCAAATTAGTTCTAATACTCTTCCATTATTATCTCGTGATCCGGTTGGAGATGGCATAGTTCAGGCAAATCCCAATGTGTCCTCATCATCAACCTCAGAGGAAATCAACTTGAATCTCAGCCTTTAA 900 0.4411 MSERISIGNAEDRNLKRKMMEEPESKSEKEAKTMPPTSKSDVENLLIMRLGAPTKSTSKPLETGDHSSSAENTAGEPLPQPEVKEFSCTYCDKKFSTSQALGGHQNAHKRERNFKKMEDKRREEEMDSSLRFRSINQPYPYPFSSPIHYQSYSYFRSANLLNPIGAHVNNTLPSWLGSSSGGYGGLYTPNTPAASRYVMQMQNSPLATPRFGRTNLWGGAQDAALPIPQRSNTLGLGLFAQGNQTPPSAEGPERNFIDQISSNTLPLLSRDPVGDGIVQANPNVSSSSTSEEINLNLSL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3333 299 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 44 214 IPR044246 GO:0009788
Mal3g3333 299 Gene3D Classic Zinc Finger 71 137 - -
Mal3g3333 299 MobiDBLite consensus disorder prediction 271 299 - -
Mal3g3333 299 MobiDBLite consensus disorder prediction 1 36 - -
Mal3g3333 299 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mal3g3333 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Mal3g3333 299 MobiDBLite consensus disorder prediction 279 299 - -
Mal3g3333 299 MobiDBLite consensus disorder prediction 1 81 - -
Mal3g3333 299 SUPERFAMILY beta-beta-alpha zinc fingers 84 115 IPR036236 -
Mal3g3333 299 MobiDBLite consensus disorder prediction 56 75 - -
Mal3g3333 299 Pfam C2H2-type zinc finger 86 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3333 Mal-Chr3 109570020 109570919 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3333 23 127 C2H2 Transcription Factor Family AT5G27880 40.367 5.03e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g3333 zf-C2H2_6 6.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3333 - - cam:101490368 244.588