Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3291 ATGGTGAGGAAGAGAAAACTCGTTAAATCCTCTCAACAAGAAGAACCACCACTCAAGCAACATCAACCGGAGCCTCAACCGGAGCCGGAACCCGAACCGGAACCATACATCCCGGCGGAAGAATACGAAGAAGTCGAAGAAGAAGTTGAATACGAAGAAGTAGAAGAAGAAGTAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAACAAACTCAAGGAGGAGGTGGATATCATGACGAAGACGATGAACCGATCCAGAAGCTTCTAGAACCTTTCACAAAAGAACAGATCTCGAGTCTTCTTTGCGAAGCGGCTTCAAAGCATCGTGATATTGCAGATCGGATTCGTAAGATTGCTGATGGTGATGCTTCGCATCGGAAAATCTTTGTTCATGGTTTGGGATGGGATACTACTTCTGCAACGCTAATTAACGCGTTTTCGCAGTACGGTGATATTGAGGATTGTAAAGCGGTTACGGATAAGGTTTCAGGGAAATCTAAGGGTTATGGATTTATTTTGTTTAAGAAACGAAGCGGAGCAAGGAATGCATTGAAGGAGCCGCAGAAGAAGATTGGGAATCGAATGACGGCATGCCAGCTGGCGTCTATTGGTCCTGTGCAGCAAACCCCGCCGGTGGTGGCGCCGCAGCAGTTGGTGGTGCCGGGTTCGGAGTATACGCAGAGGAAGATTTATATTAGTAATGTTGGAGCTGATCTGGAGGCACAGAAGCTGTTTGCTTTTTTTTCGAGGTATGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGATAAGGTGACAGGGAAGCCGAAAGGGTTTTGTTTGTTTGTGTATAAGAGTGCTGAGAGTGCGAGGAGGGCGTTGGAGGAGCCTCATAAGGAGTTTGAGGGACATATTTTGCATTGTCAGAAGGCAATTGATGGGCCTAAGGTGATGAAGCCACAACATCAGCCGCAGCAGTTGCAGCACCAACATGTGAATTCTATGAATCAATTGAACCAGTTGAATCCATTGACTCAGAGGACACAATATCAGAGAAATGACAATGTTGGATTTGTTGGTGGAAGTAGTGTTGCAGTCAGCCAACCAGGGCACTTAATGGCACCAGCGGGACCAGCAGCCGGGTACAATCAGGCGGCTGCTTCTGCCACGCAGGGGCTGAACCCTGCGCTGACTCCTGCGCTTGGACATGCGTTGACGGCGCTGCTTGCGTCTCAGGGTGCTTCTTTGGGGCTGGGTAATTTGTTGGGGAGTCTTGGAACGAGTAGTGCAGTTAATCCAGGCGTTCCTGCTGCAGGTCATGGAGTTCAGAGTGGATATAGTGCTCAGCCTAGTATAAGTCCAACAGTTATGGGAGCATATGGGAATGCACTGCCACAGGCTGGATTGCAGGTGCTATATCAGAACCAGCAGATTGGACAGGGTGGTTCTGGAAGAGGGCAATACGGTGGAGCTGCACCTTATCACTAG 1476 0.4905 MVRKRKLVKSSQQEEPPLKQHQPEPQPEPEPEPEPYIPAEEYEEVEEEVEYEEVEEEVEEEEEEEEEEEEEEEQTQGGGGYHDEDDEPIQKLLEPFTKEQISSLLCEAASKHRDIADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGDIEDCKAVTDKVSGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPPVVAPQQLVVPGSEYTQRKIYISNVGADLEAQKLFAFFSRYGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKVMKPQHQPQQLQHQHVNSMNQLNQLNPLTQRTQYQRNDNVGFVGGSSVAVSQPGHLMAPAGPAAGYNQAAASATQGLNPALTPALGHALTALLASQGASLGLGNLLGSLGTSSAVNPGVPAAGHGVQSGYSAQPSISPTVMGAYGNALPQAGLQVLYQNQQIGQGGSGRGQYGGAAPYH* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3291 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 320 IPR000504 GO:0003723
Mal3g3291 491 SUPERFAMILY RNA-binding domain, RBD 210 320 IPR035979 GO:0003676
Mal3g3291 491 CDD RRM_RBM24_RBM38_like 130 205 - -
Mal3g3291 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 198 IPR000504 GO:0003723
Mal3g3291 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Mal3g3291 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 241 IPR000504 GO:0003723
Mal3g3291 491 MobiDBLite consensus disorder prediction 34 74 - -
Mal3g3291 491 Coils Coil 42 78 - -
Mal3g3291 491 CDD RRM_RBM24_RBM38_like 232 307 - -
Mal3g3291 491 PANTHER GEO13361P1-RELATED 25 490 - -
Mal3g3291 491 Gene3D - 37 213 IPR012677 -
Mal3g3291 491 SUPERFAMILY RNA-binding domain, RBD 128 213 IPR035979 GO:0003676
Mal3g3291 491 PANTHER - 25 490 - -
Mal3g3291 491 SMART rrm1_1 233 305 IPR000504 GO:0003723
Mal3g3291 491 SMART rrm1_1 131 203 IPR000504 GO:0003723
Mal3g3291 491 MobiDBLite consensus disorder prediction 1 86 - -
Mal3g3291 491 Gene3D - 227 336 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3291 Mal-Chr3 109064900 109066375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3291 228 311 C2H2 Transcription Factor Family AT2G19380 35.714 1.09e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3291 3 109064900 109066375 Mal3g3291 3 109064900 109066375 ECH