Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3252 ATGGGAAGGCCTCCTTGTTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGAACAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACTTGAGGCCAGGAATCAAGAGAGGAAACTTCACTCCTCATGAAGAAGGAATGATAATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATATCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTTAACAAATTTCAAGCAGCTTTAGATCAACCATCAAATTCAACAACCACAACTTATCTATCCAAGAGTTTTAGTGATAGAAGTTTAGATATAAGCAATAATCATGCTTCATCTCTTAAGCTAACAACTCAAAGTTCTCATCAATCTTCTTCATCAACATATGCTTCAAGCACTGAGAATATTTCAAGACTCTTAGAAGGTTGGATGAGATCTTCTCCAAATTCACAAATCAAAGGAAATTACCAATATGGTCATCAAGAGTTTCAAAGCATTCATGATGATATGATGGATGATAATAATGAGTTTGAAAATAATGGTAAGTTATTAGTGAAATCTTCTTCAGTTCCAGCTGATTTAAACCTTGAAATCCATCATCATCATCATCATCATCATCAAAAAATTACCACCAAAGGTGAATTATTACAAGATGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAACAATGGTGCTGCTTGGGATAAGTCAACTTGTGATTCTATGCCTGAAAAACGTTCTGCAGCTTCTTCTTCTTCTGATCACAAGAATATTAAGAATTTATGTGTAGCTCCTCCTCCTTTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGTCATGTGGAGGAAATGATGGAATTATCTCCAATGTTCTAA 1026 0.3567 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRTVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAALDQPSNSTTTTYLSKSFSDRSLDISNNHASSLKLTTQSSHQSSSSTYASSTENISRLLEGWMRSSPNSQIKGNYQYGHQEFQSIHDDMMDDNNEFENNGKLLVKSSSVPADLNLEIHHHHHHHHQKITTKGELLQDGGVSHDQEFDSILSFENLNNGAAWDKSTCDSMPEKRSAASSSSDHKNIKNLCVAPPPLSFLEKWLLDENVGHVEEMMELSPMF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3252 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 333 - -
Mal3g3252 341 PANTHER TRANSCRIPTION FACTOR MYB60 1 333 - -
Mal3g3252 341 CDD SANT 69 112 IPR001005 -
Mal3g3252 341 Gene3D - 13 66 - -
Mal3g3252 341 MobiDBLite consensus disorder prediction 291 306 - -
Mal3g3252 341 CDD SANT 16 61 IPR001005 -
Mal3g3252 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mal3g3252 341 MobiDBLite consensus disorder prediction 287 306 - -
Mal3g3252 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal3g3252 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal3g3252 341 Gene3D - 68 167 - -
Mal3g3252 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal3g3252 341 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal3g3252 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal3g3252 341 SMART sant 13 63 IPR001005 -
Mal3g3252 341 SMART sant 66 114 IPR001005 -
Mal3g3252 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3252 Mal-Chr3 108538097 108539703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3252 1 133 MYB Transcription Factor Family AT5G62470 78.947 1.12e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g3252 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3252 K09422 - gmx:100802204 437.958