Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3244 ATGAGTTCACAAAAGTTCAACAATGGTGATATGAGTCTTTTTCCTTTAGCTCCTATTCCTTCAACTCATCTTATGGATTCCAAAGCTCATCCTTTGACAAATCCTGAAAAGGGTCTTCAGATTTTGCGACGCTCAATGTTTCAGTCCAAAGTAGAAGAAGATGGGTGCTTTGAGGTTCAGGGAAAAAACTTGTCTTTGAAACTTGGTGATGAAGTAGAAGAAAAAAGCTCTGTTTCTGTGAAAATAGGGTACTCCAAGCTTTGTTCTAGAGGTCATTGGAGGCCAATAGAAGATGCAAAACTTAAAGAGCTTGTTGCTGAATATGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGAAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTCAATCAGCTAGATCCAAGGATCAACAAAAAAACCTTTTCTGAGGAGGAAGAAGAGAGACTCTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATAATTGCTAGACTTTTTCCTGGAAGGACAGATAATGCAGTGAAGAATCATTGGCATGTAATCATGGCTAGAAGACATAGGGAACAGTGTACTGTTTATAGAAGGAGAAAACCAGTTGTTGAAAGTCTTTCAAAGGGTTTACAATTGAGTCTTTCAAACAATGCAGCTAGTGATTCAACTATCTCAAGCACCATTGATGGAAATGCACCAACTTGTAGTACTAATCTCTCCCTCACTCCCTCTTCAGCTAAACTAAGTCCTCAATTGTTTGATAAACTAGTAGCTCCAGTTCAGAATCACCAAGATTATGGATCATTAGTTGGCAAATGTAGAGAAAGTGTGGTGGAAACTAGGGAAATGAGTTTTGACAAGTATTTTGGAGCTAGTAAGAAGCATGAACAAGTGGAAAAGCTAAAGCTAATAGAAGTGGTGGACCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGTATCTGAGTCAGTTACCACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTGTTAAGATTAACATGTTACTACCATTCATTGATTTTCTTGGAGTAGGAGCTATACATACATAG 1095 0.379 MSSQKFNNGDMSLFPLAPIPSTHLMDSKAHPLTNPEKGLQILRRSMFQSKVEEDGCFEVQGKNLSLKLGDEVEEKSSVSVKIGYSKLCSRGHWRPIEDAKLKELVAEYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINKKTFSEEEEERLLAAHKMYGNKWAIIARLFPGRTDNAVKNHWHVIMARRHREQCTVYRRRKPVVESLSKGLQLSLSNNAASDSTISSTIDGNAPTCSTNLSLTPSSAKLSPQLFDKLVAPVQNHQDYGSLVGKCRESVVETREMSFDKYFGASKKHEQVEKLKLIEVVDQSNFSDSNSEVSVSESVTTNRSNISISGESENVGVKINMLLPFIDFLGVGAIHT* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3244 364 PANTHER MYB PROTEIN-RELATED 58 361 - -
Mal3g3244 364 SUPERFAMILY Homeodomain-like 90 183 IPR009057 -
Mal3g3244 364 Gene3D - 143 202 - -
Mal3g3244 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 191 IPR017930 -
Mal3g3244 364 Gene3D - 90 141 - -
Mal3g3244 364 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Mal3g3244 364 CDD SANT 93 134 IPR001005 -
Mal3g3244 364 ProSiteProfiles Myb-like domain profile. 90 136 IPR001005 -
Mal3g3244 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 136 IPR017930 -
Mal3g3244 364 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Mal3g3244 364 Pfam Myb-like DNA-binding domain 142 185 IPR001005 -
Mal3g3244 364 SMART sant 89 138 IPR001005 -
Mal3g3244 364 SMART sant 141 189 IPR001005 -
Mal3g3244 364 PANTHER OS08G0435700 PROTEIN 58 361 - -
Mal3g3244 364 CDD SANT 153 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3244 Mal-Chr3 108362143 108363883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3244 85 361 MYB Transcription Factor Family AT5G17800 44.097 7.25e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g3244 Myb_DNA-binding 8.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3244 3 108362143 108363883 Mal3g3244 3 108362143 108363883 ECH
Mal3g3244 3 108362143 108363883 Mal6g4092 6 116838018 116839655 PCT