Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3234 ATGAACATGTCTGAGACTGAGAAGAATCCTGGTATTATGCTATTTGGCTGGAAGATTCCGGTGCCGGAATGTCGAATTCCGGCCAGTTCTGGACCCATGGATATTTGCAGCAGTACAAAGAAAACAGAAGTGGAAATACTTTGTGCAGAAAAAACTGAGCAACAGGACAATTCTTCTGATTCAATGGATAGTAAGCAAGGGTCTGTGCAGGAAAAGGAGCCAATAGTAAATTCCAAGCCCACCGAAGATGACACAGAGACCGGTGATACAGATCAAGATAAACTCTTAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAACGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCGATAGGTGCTGGGAGGCGGAAGAATAAGCACCTAGCCTCTCAATACCGGCAAATTATAGTAACCTCGGACGGAATTCCAACCACGGGGCTAGAAAATACAAACTCATCCGGTCACCACCATACATCAACGGATAACGAGACTGTACTGAAATTTGGTCCTGATACCCCTCTTTGCGAATCAATGGAGTCGATGCTTCATCTTAAAGACCAGAAAAAAAGTGTTGTTGCAAATTCAAATAGTTGTGTGCAACATAGAGAGGAACCATCCTTATGTGGATCTTCCGTAACAAATACTGGCAATCAAGGAAATGAATTATCAGAACAGAATGCATCAAATTGGTTGCAGTGTTATCCTGTTTCTCCATGGGTACTACCGATGAATCCAGCTTGGAATAATGTTGCTTCAATGGCAGCAGTTCATCCGACTTCGGCATCCATGCAATGGTGTCCGACGCCTATGTTGGCAATTCCAGGAATTCGGCCACAAAACATACCTTTACAACTTGTAGCAGCATCACACTGGAGTGGACCATCACTTCGCCTCTCGCCGCCTTCCTCTACAAGTAACAGTTGCTGCTCAGGAAATGGCTCACCAACCCTAGGAAAGCACACTAGAGACACCGTTTTTGCAGACGAAGATAAAACAGACAAGTGTGTTCCGGTTCGAAAAACGATTAGAACTGATGTTACAGATGCGATCTCGAAAAGTCCTATTCGGGCTACATTAGCTATCAAGAAGCCTAATGGAGAAGGCAAAGACGGTGTTTTGGGTGCCTCTCAGATTTTGGAAGCCAACTCAGCAGCTATTTCTCATGCTCATACAGTCCAGGAAAGCATATAA 1281 0.4418 MNMSETEKNPGIMLFGWKIPVPECRIPASSGPMDICSSTKKTEVEILCAEKTEQQDNSSDSMDSKQGSVQEKEPIVNSKPTEDDTETGDTDQDKLLKKPDKIVQCPRCNSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVTSDGIPTTGLENTNSSGHHHTSTDNETVLKFGPDTPLCESMESMLHLKDQKKSVVANSNSCVQHREEPSLCGSSVTNTGNQGNELSEQNASNWLQCYPVSPWVLPMNPAWNNVASMAAVHPTSASMQWCPTPMLAIPGIRPQNIPLQLVAASHWSGPSLRLSPPSSTSNSCCSGNGSPTLGKHTRDTVFADEDKTDKCVPVRKTIRTDVTDAISKSPIRATLAIKKPNGEGKDGVLGASQILEANSAAISHAHTVQESI* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3234 426 MobiDBLite consensus disorder prediction 51 75 - -
Mal3g3234 426 PANTHER CYCLIC DOF FACTOR 3-LIKE 3 425 - -
Mal3g3234 426 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Mal3g3234 426 MobiDBLite consensus disorder prediction 47 95 - -
Mal3g3234 426 PANTHER CYCLIC DOF FACTOR 2 3 425 IPR045174 GO:0003700|GO:0006355
Mal3g3234 426 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Mal3g3234 426 Pfam Dof domain, zinc finger 100 157 IPR003851 GO:0003677|GO:0006355
Mal3g3234 426 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3234 Mal-Chr3 108237589 108239918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3234 40 425 C2C2-Dof Transcription Factor Family AT5G39660 35.392 1.37e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal3g3234 zf-Dof 1.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3234 3 108237589 108239918 Mal3g3234 3 108237589 108239918 ECH
Mal3g3234 3 108237589 108239918 Mal6g4081 6 116406999 116408732 PCT