Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3165 ATGGCAATTGCACGCACTGGTGTCTACGTCGATGACTATTTGGAGTATGCCAACACACTACCCGCGGAGCTTCAGCGACTCCTTAACACCGTTCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAGACAAGGCAGCAGACAAAGTACTGTATGGGGTTCTCATCCCATGGCTCTAAGAAGAGTAATCATAATTATAATAACAATTACATGAATGACGATGATGATGCTTCCATTGAGAAAATGCGAAAAGAAATCGAGGCAAATCAGGATAGTGCATTGAGTTTATGCACTGAGAAGGTTTTGTTGGCACGTCAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACTACTTCGCTGAAGATTTAAAGCAAGAGGGGAAAATATCACAAGATGAACCAGCAATTCTCCCCCCACTGCCTATTGTCCCTAAACCTGAAAAGCGCAGGCACGCATATGGTACACCTCAATCAAAGAGACTTGATTATAGGGAGAGAGACTGGGATAGAGACTTTGAACTAATGCCTCCACCAGGAGGTCATAAGAGGGATTATATGATCCCGATGGATGTTGATCAACCCATTGATCCCAATGAGCCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACTACCACAATGTCAATGA 792 0.428 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKSNHNYNNNYMNDDDDASIEKMRKEIEANQDSALSLCTEKVLLARQAYELIDSHVKRLDEDLNYFAEDLKQEGKISQDEPAILPPLPIVPKPEKRRHAYGTPQSKRLDYRERDWDRDFELMPPPGGHKRDYMIPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3165 263 SUPERFAMILY FYVE/PHD zinc finger 185 258 IPR011011 -
Mal3g3165 263 SMART PHD_3 209 257 IPR001965 -
Mal3g3165 263 Gene3D - 5 124 - -
Mal3g3165 263 Coils Coil 24 44 - -
Mal3g3165 263 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 125 IPR024610 -
Mal3g3165 263 ProSiteProfiles Zinc finger PHD-type profile. 207 259 IPR019787 -
Mal3g3165 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 258 IPR013083 -
Mal3g3165 263 Pfam PHD-finger 209 257 IPR019787 -
Mal3g3165 263 CDD ING_plant 19 123 - -
Mal3g3165 263 PANTHER INHIBITOR OF GROWTH PROTEIN 2 259 IPR028651 -
Mal3g3165 263 PANTHER PHD FINGER PROTEIN ING2 2 259 - -
Mal3g3165 263 SMART ING_2 9 126 IPR024610 -
Mal3g3165 263 MobiDBLite consensus disorder prediction 141 162 - -
Mal3g3165 263 CDD PHD_ING 209 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3165 Mal-Chr3 107275561 107277890 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal3g3165 ING 5.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3165 K11346 - gmx:100787916 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3165 3 107275561 107277890 Mal3g3165 3 107275561 107277890 ECH