Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3163 ATGGATGTGTGCCAAAATGTACCAGTTTCTAGTGAGTGCAAACAAGAGAAGGTTCTTAACTCTTCTTGCTCAAACCTTTCAAGTAGCCTTGATGACCTCTTTTCTGCTCAAAACATGGAAGTGGATGTAGGAATGGAATGGCTTTCAGTGTTTGTTGAAGACTGTTTCTCAAGCCCTCAAAGTTGTGTCCTTTTACCTTCTAATGTTCAAAACACAACAAATACTATCTCATCAAAACCTTCAAACACAGTGAAGCAACCAAAGCAAGAACAAAATGAGTCACCTTTTGCAGTGCCAGGGAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCTCCAAGAAGACCAAAAGACCCTTTAAGTATTTTGTCCAACACATTAAATCCACAAAATGAGTCACTATGTTCTGACCCACCTCTCTTGAAACAAGCTTATTGGTTAGCTGATAGTGAACTCATGGTACCTAAGGGTGAAAATGAGGTAACAAAAGATTGTGAAGTAGTTGAAAAGGAGATTGTGAAAAAGAAAAGGTTTGATTTTGAAGGTTTTGAGGGTTTTGAGAATGATGTTAACAATGGTCAAAATCTAATTCCAACAAGGAAGTGTACACATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGTCCATTAGGCCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGACCAGCAAAGAGTCCAACTTTTGTTAGCTATTTGCATTCCAATTCACATAAGAAAGTCATGGAGATGAGGATGAATGTTGTATCTTCCATTAATCCTAGTGAGTAG 825 0.3915 MDVCQNVPVSSECKQEKVLNSSCSNLSSSLDDLFSAQNMEVDVGMEWLSVFVEDCFSSPQSCVLLPSNVQNTTNTISSKPSNTVKQPKQEQNESPFAVPGKARSKRKRLSAPRRPKDPLSILSNTLNPQNESLCSDPPLLKQAYWLADSELMVPKGENEVTKDCEVVEKEIVKKKRFDFEGFEGFENDVNNGQNLIPTRKCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVVSSINPSE* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3163 274 Gene3D - 197 264 IPR013088 GO:0006355|GO:0008270
Mal3g3163 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 259 - -
Mal3g3163 274 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Mal3g3163 274 ProSiteProfiles GATA-type zinc finger domain profile. 199 231 IPR000679 GO:0006355|GO:0043565
Mal3g3163 274 MobiDBLite consensus disorder prediction 73 93 - -
Mal3g3163 274 MobiDBLite consensus disorder prediction 73 130 - -
Mal3g3163 274 PANTHER GATA TRANSCRIPTION FACTOR 1 273 - -
Mal3g3163 274 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Mal3g3163 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 273 - -
Mal3g3163 274 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
Mal3g3163 274 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3163 Mal-Chr3 107258376 107259514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3163 45 263 C2C2-Gata Transcription Factor Family AT4G32890 42.222 1.55e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal3g3163 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3163 - - gmx:100786479 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3163 3 107258376 107259514 Mal3g3163 3 107258376 107259514 ECH