Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3151 ATGTCATTGCCTTTTAAAAGAAGAAACCGTAAATATCAACACATCAAGCCGCCGGAGTCTACAACTTCCTTCTCTTCAAAAGGTGTAATGGAGTCTCTGATGATTTCCAACCCTAAATTACTTGATTGCTGCAATTGTTTTCAACCCTTACGTATTCCCGTCTTTCAGTGTGATAATGGTCATGTTGTTTGCTCTACCTGCTGTCCTAAACTTAGGAAGAAGTGTCACAAGTGCTCATTGTACATGAGCTCAAAACATTGCAAAGCCATTGAGAATCTATTGCTATCTATCGAAATGCCATGTCAGAACGCAAAACATGGTTGCAAGGAGAAAGTAAGTTACATTGGAAAGAGGAAGCATGAAGAAGAATGCATCCATAGGCCATGTTACTGCCCCCTTTTAGGTTGTGACTTTGTTGCAACATCAGAAGTGTTGTCCAACCATTTCATTCATAAACACGGGGATTCTCAAATCAATTTTTCTTACGGTCACTCCTTCATTGTCTCCTTGAAGTTTAATGATGAAATCATTGTTCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAATCATAGTAATATGATTTTGGGAAATGCAGTCAATATTTGCTGCATTGGTCCTAACTCTTCTGAGTCCGAGTATAGTTATGATATATTGGCTACCTCTGAGATATGCAAACTGAAATTACAGTCTTTTGCGAAGAACGTTCAACGGTTTACTTTACCAACTCTTTCACCAGAGTTCCTTTTGATTCCATTTGGTTCTTCTGAACCTCTCAAGCTAGAAATTTGCATAAACTCCCCCATGATGCAAATATTCATAAAGACCCTGACTAGAAAGAGGTTCCCCCTGAGGGTTAAGAGTTCAAACACGATAGTCAATGTGAAGAAGAAGATTCTTGACAAGGAAAAAATCTCAGTGCAGGACCAGCGTCTGAAATTTGCCGGTAAGTATCTAGATGATAATAACCTGACCCTTGCCAATTACAACATCGAAGAGAACTCAACTCTTGACCTCTTCGAACGCCTCACTGGGGACTAG 1044 0.3937 MSLPFKRRNRKYQHIKPPESTTSFSSKGVMESLMISNPKLLDCCNCFQPLRIPVFQCDNGHVVCSTCCPKLRKKCHKCSLYMSSKHCKAIENLLLSIEMPCQNAKHGCKEKVSYIGKRKHEEECIHRPCYCPLLGCDFVATSEVLSNHFIHKHGDSQINFSYGHSFIVSLKFNDEIIVLQEENDGKLFILNHSNMILGNAVNICCIGPNSSESEYSYDILATSEICKLKLQSFAKNVQRFTLPTLSPEFLLIPFGSSEPLKLEICINSPMMQIFIKTLTRKRFPLRVKSSNTIVNVKKKILDKEKISVQDQRLKFAGKYLDDNNLTLANYNIEENSTLDLFERLTGD* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3151 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 268 - -
Mal3g3151 347 Gene3D - 266 347 - -
Mal3g3151 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 149 IPR013083 -
Mal3g3151 347 PRINTS Ubiquitin signature 302 322 IPR019956 -
Mal3g3151 347 PRINTS Ubiquitin signature 281 301 IPR019956 -
Mal3g3151 347 ProSiteProfiles Ubiquitin domain profile. 271 347 IPR000626 GO:0005515
Mal3g3151 347 SUPERFAMILY Ubiquitin-like 266 346 IPR029071 -
Mal3g3151 347 SUPERFAMILY TRAF domain-like 97 266 - -
Mal3g3151 347 Pfam Seven in absentia protein family 88 238 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal3g3151 347 Pfam Ubiquitin family 273 343 IPR000626 GO:0005515
Mal3g3151 347 ProSiteProfiles Zinc finger SIAH-type profile. 96 154 IPR013010 GO:0008270
Mal3g3151 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 268 IPR044286 -
Mal3g3151 347 SMART ubq_7 271 343 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3151 Mal-Chr3 107014347 107016959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3151 271 346 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 60.526 6.07e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3151 K04506 - gmx:100778869 235.728