LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g3150	ATGGTGGGTGCTATAAAAGCAGCAATAGGAGACTTAGTATTAACATTCATGTGGGTATTTTGTTCATCCATGTTGGGTATAGTTTCTAGTGCTATAACAAAAGCCCTTGATCTTCAAAACGTTTCATACAATGGTTTCCCTTACCCTTCTTTGATTATAACAACTACCCTTGTTTTTCTTCTTGTTTTCTTGTTTACCATCATTGGTAATGCAATGGGTGGTGCTAGCTTTAACCCTACTGGTACTGCTGCGTTTTACTCTGTTGGGCTTGGTTCTGATACCCTTTTCTCTATGGCTCTTCGTTTCCCTGCTCAGGCGCTTGGTGCTGCGGGTGGTGCAATGGCAATTGCAGAGTTGATTCATCCGAAATACAAGCACATGATTGGAGGTCCTTCTTTGAAAGTGGACTTGCATACCGGGGCTGTTGCTGAATTGGTTTTGACATTTGTGATTACTTTTGCTGTTCTCTGCATATTCCTCAAGGGACCTCGTAATGATTTAATGAAGATTTGGTTGCTGGCTATGTCAACCGTCACTTTGGTCATGGTTGGCTCTGCTTACACTGGTCCATCCATGAACCCAGCCAATGCCTTTGGTTGGGCATACTTAAACAACTGGCACAACACTTGGGACCAATTCTATGTTTACTGGATTTGCCCCTTCACCGGAGCAATATTGGCTGCTTGGCTATTCAAAGCTGTCTTCCCTCCACCAGAAGTTAAACAGAAAAAAGCATGA	738	0.4309	MVGAIKAAIGDLVLTFMWVFCSSMLGIVSSAITKALDLQNVSYNGFPYPSLIITTTLVFLLVFLFTIIGNAMGGASFNPTGTAAFYSVGLGSDTLFSMALRFPAQALGAAGGAMAIAELIHPKYKHMIGGPSLKVDLHTGAVAELVLTFVITFAVLCIFLKGPRNDLMKIWLLAMSTVTLVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFKAVFPPPEVKQKKA*	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g3150	245	Pfam	Major intrinsic protein	4	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PANTHER	AQUAPORIN SIP1-1	3	245	IPR044222	GO:0015250
	Mal3g3150	245	SUPERFAMILY	Aquaporin-like	4	238	IPR023271	-
	Mal3g3150	245	Gene3D	Glycerol uptake facilitator protein.	3	244	IPR023271	-
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal3g3150	245	PANTHER	AQUAPORIN SIP1-1	3	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g3150	Mal-Chr3	107008920	107013340	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g3150	1	235	Major Intrinsic Protein MIP	AT3G04090	57.447	1.45e-82	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal3g3150	K09875		-	gmx:102669186	410.609

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal3g3150	3	107008920	107013340	Mal3g3150	3	107008920	107013340	ECH
	Mal3g3150	3	107008920	107013340	Mal8g3780	8	109759110	109763987	PCT