Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3069 ATGGAGAGATACACGCTACCTTTACCACCACAACAAGTTCACAATACTCTCACTATACCTTGGACTGAATCACAACAAGAACAAGATTCACCTTCTTCATGGTCCAGACCTAACTCCGAACCTAAACATAACACCGACCAAGACATTGCAATTGCTATTGCCATGGCTGGTTCCTCTCTCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGACAACAACAACTTCTACAACAACAATAACAACAACAACGTTGTTAATGTTAATAATAATGTTATTCCCTTAACAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAACAGCAACAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAACTTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAATCTTGAACTCGATGCTGCAGCAGCACCATTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCTCAACAGCAACAACAACAACAACAACAACAACAGCAACAACAACCCACAACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACTGTGGGGAACAAGAAGAAGAGGAAGGTGGAGAAGAGTTGGGAAGAAGAAGGAAGTGGTGTTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCGGCGAAGAATCTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACCTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAACGAACTGGAATCAACTCCACCTGGCTCTATGTTACAACCTTCTGCTAGTGCAAGCTTTCACCCGTTGACACCCACCCCGCCGACCCTTCCTTGTCGAGTGAAGGAGGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCGGTCAACATTCATATGTTTTGTACCCGCAGACCAGGACTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTTCAGCAGGCTGTTATTAGTTGTTTTAATGGTTTTGCTTTAGACGTGTTCAGAGCTGAGCAATGCCGAGAAGGCCAGGACGTCCTCCCCGAGCAAATTAAAGCTGTGCTTTTGGATTCAGCGGGCTACCATGGTTTGAATTGA 1446 0.4461 MERYTLPLPPQQVHNTLTIPWTESQQEQDSPSSWSRPNSEPKHNTDQDIAIAIAMAGSSLPFFKPEPQPEPDNNNFYNNNNNNNVVNVNNNVIPLTDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNSNNPFEMGFENGFFMGNNNTSTSPVFMGGSLSASEFPPNLELDAAAAPFSASFSMPLELAQPQQQQQQQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGVGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSMLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3069 481 MobiDBLite consensus disorder prediction 217 243 - -
Mal3g3069 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Mal3g3069 481 Coils Coil 331 351 - -
Mal3g3069 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 359 IPR036638 GO:0046983
Mal3g3069 481 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 70 480 - -
Mal3g3069 481 Gene3D - 280 351 IPR036638 GO:0046983
Mal3g3069 481 SMART finulus 294 343 IPR011598 GO:0046983
Mal3g3069 481 MobiDBLite consensus disorder prediction 188 212 - -
Mal3g3069 481 MobiDBLite consensus disorder prediction 261 278 - -
Mal3g3069 481 CDD bHLH_AtAMS_like 291 356 - -
Mal3g3069 481 Pfam Helix-loop-helix DNA-binding domain 295 337 IPR011598 GO:0046983
Mal3g3069 481 MobiDBLite consensus disorder prediction 9 40 - -
Mal3g3069 481 MobiDBLite consensus disorder prediction 1 44 - -
Mal3g3069 481 CDD ACT_UUR-ACR-like 410 470 - -
Mal3g3069 481 MobiDBLite consensus disorder prediction 188 290 - -
Mal3g3069 481 PANTHER BHLH TRANSCRIPTIONAL FACTOR 70 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3069 Mal-Chr3 105682357 105685066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3069 119 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.372 1.10e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g3069 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3069 - - mtr:MTR_7g083900 730.324