Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3010 ATGGCTTCCGAATCCAAATCCCAAACCCTAGAAGCGTTAAACTCCACCCAATTATTCACCGCCGCACTTCAATCCCTCAATCTCCCACCACCCACTCTCCCCCTCCCACCACTCCCTTCCACCATCCCCCACTCCAAATTCATCCCCAACACCCGCTTCCTCATCGACGCCTTCCGCCACTCCACCCCCTCCTCCGCTTCCTACTTCCTCTCCCACTTCCACTCCGATCACTACACCCCCATCACCTCCACCTGGTCCCACGGCATCATCTTCTGTTCCCCAATCACCGCTAACCTCCTCATCAACATCCTCCACATCCCTCCCTCTTTCATCCACTCTCTCCCTCTCAACCAACCCGTTCAAATTGATGGCTCCGTTGTAACGCTAATTGACGCTAATCACTGCCCTGGCGCGGTTCAGTTTCTTTTTAAAGTCAATGAGTCATTTAGGTATGTTCATACTGGTGATTTTAGGTTTAACTGTGAAATGATTTCGGATTCTGTGCTCAGTGAATTTATTGGTGCGGATGCTGTGTTTTTGGATACGACTTATTGTCATCCAAAATTTGTTTTTCCGACTCAAGATGAGTCGGTTGATTATGTTGTTGATGTTGTAAAGGAATGTGATGGTGAGGATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGATTGCAAGGAGGTGTGGGAAGAAAGTGTGTGTGGATGGTAAGAAGATGGAGGTTTTGAGGGCTCTTGGGTATGGTGAAAGTGGTGAGTTTACTGAGGATAGGTTGGAGAGTAATGTTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCGAATTTTGCTAGGATGAAGGAGATTATGGTTGAGAGAGGGTACTCTAAGGTTGTGGGTTTTGTGCCGACTGGATGGACTTATGAAGTGAAGCGTGATAAGTTTAAGGTTAGGGAGAAGGATTCGTGTCGGATTCATCTTGTGCCGTATAGTGAGCATTCAAATTATGAGGAGCTTAGGGAATATGTGAGGTTTTTGAAACCGAAGAAGGTTGTCCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGGTTGGTTGATGAGACGGCCAACAAGCAAGATTTTTTAAAGGGTTTTAAGCGGTGCGGTTCCAGTGTAGTGGGTTTTGAGGGTGAGAAGGATGTTAGTGATGATATGGAACCAGGGCAGAGCATCGAGAAAGAAGTGAAGCCATCTGATTCGGGAGGGGATAAAAGTATTAATCCGGATGTTGCAGTGAGCCTGTCATCTTGTATGGGAGAAACTTGCATGGAAGATCCTACATTGCTAAATGAAGAGGAAAAAGATAAAGTTGTTCAGGAATTGAGTTGTTGTTTGCCCACGTGGGTCACCCGAAGCCAGATGTTAGATCTAATCAGCATCTCTGGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCCGGTCAAACTTCAGTTCCAGCACCCAAGTGTTGCTCATCGAATGAAACCAGTCCTATTTCAAAATCAAACCTCAAGTCTTGCTCATCGAATGACGCCAGTCTGTTTTCAAAGTCAAACCTCAACAATACAAACAGCACTACAAAAAAATTGAACCTTTTTCCTAGTCAAGACTCTAAATTGACTAACCTGAGGAAAGCGTTATCAAATCAGATTTCCCCTTCCAAAAGAAAGAGGGGTAGTGAAAGTAAGTCAAACAAGAAAGTAAAAGTCAAAGCAAAATTAGAATCAAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTCGGCAAAGCAATGCCCGTGATGTCTGGTGATACTCAATCTGATCAATTTGGATCGAAGCCCGGTGAAAGCCCCGAAGTTGAAGAATTGTTGCCAACTGATGCTGGAAACTTGTATAAGCAAGAGATTGATCAGTTTATGCAAATAATAAATGGGAATGAGTCATTAAAGAAGCAAGCAATTACTATAATTGAGGAGACAAAAGGAGACATCAATAAGGCATTGGATATATATTACTCTAATTCTTGCAATCTTGGTGAAAGTGAATTATCAGTTCTAGGGGAATGCAAAATTGACAGACCTTTAGAGAAGAAGTATGTGTCAGAAGAGTTGAGAGTTATACCTGATATTTCTATGCATAGAGTGTTAAAAGATAATGTAGATGCAACTCATGTATCTCTATCATCTGATAAATATAACCCCAAGGAACATGCGTGTTGGAAAGATGGACAGCCTGCGCCATATTTACATCTTGCACGAACCTTCAGCCTGCTTGACGATGAGAAAGGAAAGATAAAAGCTACTTCAATACTATGCAACATGTTCAGAAGTTTGTTGGTCTTGTCTCCTGAAGACGTGCTTCCTGCCGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCGCTCGAAGAGGCATGTGGGACGAATCGATTGAAAATAAGGGAGATGTATAATAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTCGCACCCCCTACACCACTTCTAATTAAGGATATTTACTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTGCGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATGAAGTTTCTTGTTCGAACCTTGGTTAGGAACTTGAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGCCCTACTGTGTGCCAAGAAGGAACTGCAGAAAATTTGAAGGTGGCGCTTCAGGTCCTTTCGGTGGCAGTTGTTGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCGAGTTTATCAATGGTTCCAGGAATCCCAGTCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAATTGATGGATCAGTTCATGTTTTTTCAAGAAATGGAGATGAATCAACTTCCAGATTCCCTGATCTGATTGACATCATAAAGGAATCTTGCAAGCCTGTTGCATCAACTTTTATAATCGATGCTGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAGGCAAAGATACTTTAGTTACTAAAGAGAAGATAAAGGTGGGCATTTGCATCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTGCTGGGTTTCCCTCTCCGCCTTAGACGAAAGTATCTGAAGGATTTGTTCTGTGATGAACGGCCTGGGTATTTTGAATATGCAAAAGAAACAACTATTGAAGCAGATGATGCTTGCTTAACGTGTGAAGCCACATTAACTAGAATAAATGGTTTCCTTGAAGATGCACTCCGCTCTTCATGTGAAGGCATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCGAAGCGTTCTGACAAATGGTTAAAGGTAAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACCGAGGAGTATCAAAGTGTATGCCGAGTAATGTCTGGGTTCACAGACTCTTTTTACATAGAGATGAAAGAATTCTTTTCTGGGGACAAAGTGTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCTGACATGTGGTTTTGTCCGCAACTGGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTGGTTCATCCATCTCGAGGCATTTCTATCAGATTTCCAAGATTTATTTGTAGTGTGTCAGACAGAAACCCAGAAGAATGTAGCACATCTGCCGATATAGTTGAAATGTTTCATTCACAGACTCGGAAAATGGATGTCCCAACTGAAGGTTGA 4221 0.4186 MASESKSQTLEALNSTQLFTAALQSLNLPPPTLPLPPLPSTIPHSKFIPNTRFLIDAFRHSTPSSASYFLSHFHSDHYTPITSTWSHGIIFCSPITANLLINILHIPPSFIHSLPLNQPVQIDGSVVTLIDANHCPGAVQFLFKVNESFRYVHTGDFRFNCEMISDSVLSEFIGADAVFLDTTYCHPKFVFPTQDESVDYVVDVVKECDGEDVLFLVATYVVGKEKILLEIARRCGKKVCVDGKKMEVLRALGYGESGEFTEDRLESNVHVVGWNVLGETWPYFRPNFARMKEIMVERGYSKVVGFVPTGWTYEVKRDKFKVREKDSCRIHLVPYSEHSNYEELREYVRFLKPKKVVPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKQDFLKGFKRCGSSVVGFEGEKDVSDDMEPGQSIEKEVKPSDSGGDKSINPDVAVSLSSCMGETCMEDPTLLNEEEKDKVVQELSCCLPTWVTRSQMLDLISISGSNVVEAVSNFFERETEFHEQVNSGQTSVPAPKCCSSNETSPISKSNLKSCSSNDASLFSKSNLNNTNSTTKKLNLFPSQDSKLTNLRKALSNQISPSKRKRGSESKSNKKVKVKAKLESSGSKQATITKFFGKAMPVMSGDTQSDQFGSKPGESPEVEELLPTDAGNLYKQEIDQFMQIINGNESLKKQAITIIEETKGDINKALDIYYSNSCNLGESELSVLGECKIDRPLEKKYVSEELRVIPDISMHRVLKDNVDATHVSLSSDKYNPKEHACWKDGQPAPYLHLARTFSLLDDEKGKIKATSILCNMFRSLLVLSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQTGNGSTLRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVCQEGTAENLKVALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPVKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLIDGSVHVFSRNGDESTSRFPDLIDIIKESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRGRGGKDTLVTKEKIKVGICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFCDERPGYFEYAKETTIEADDACLTCEATLTRINGFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFTDSFYIEMKEFFSGDKVLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFICSVSDRNPEECSTSADIVEMFHSQTRKMDVPTEG* 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3010 1406 CDD SNM1A-1C-like_MBL-fold 41 187 - -
Mal3g3010 1406 Pfam DNA ligase N terminus 777 953 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal3g3010 1406 Pfam ATP dependent DNA ligase C terminal region 1269 1373 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mal3g3010 1406 Gene3D - 1248 1404 IPR012340 -
Mal3g3010 1406 MobiDBLite consensus disorder prediction 583 611 - -
Mal3g3010 1406 Pfam ATP dependent DNA ligase domain 1023 1243 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal3g3010 1406 Gene3D - 190 338 - -
Mal3g3010 1406 Gene3D - 1034 1247 - -
Mal3g3010 1406 MobiDBLite consensus disorder prediction 513 539 - -
Mal3g3010 1406 PANTHER DNA LIGASE 5 780 - -
Mal3g3010 1406 Pfam DNA repair metallo-beta-lactamase 258 361 IPR011084 -
Mal3g3010 1406 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 979 1245 - -
Mal3g3010 1406 CDD OBF_DNA_ligase_I 1252 1395 - -
Mal3g3010 1406 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 5 780 - -
Mal3g3010 1406 MobiDBLite consensus disorder prediction 410 431 - -
Mal3g3010 1406 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 756 1006 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal3g3010 1406 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1047 1055 IPR016059 GO:0003909
Mal3g3010 1406 MobiDBLite consensus disorder prediction 410 436 - -
Mal3g3010 1406 Gene3D - 48 360 IPR036866 -
Mal3g3010 1406 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 835 1393 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mal3g3010 1406 Gene3D DNA ligase/mRNA capping enzyme 1052 1183 - -
Mal3g3010 1406 ProSiteProfiles ATP-dependent DNA ligase family profile. 1134 1281 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mal3g3010 1406 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 361 IPR036866 -
Mal3g3010 1406 SUPERFAMILY Nucleic acid-binding proteins 1252 1396 IPR012340 -
Mal3g3010 1406 Gene3D - 753 1025 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mal3g3010 1406 CDD Adenylation_DNA_ligase_I_Euk 1014 1246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3010 Mal-Chr3 104918770 104932426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3010 762 1396 Core DNA Replication Machinery Family AT1G08130 39.688 1.56e-165 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3010 - - gmx:100807673 2154.79