Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2968 ATGGCTTCTAGTACCACCAAAGACTTAGATTTTGAATATTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCTAGCATGTTGGAATCTCATCAACCTTTTCCAAGCCCTAAAAGTGACAATGATTCAAACACAACTGTAGAGGCGCGTGAAGTAAGCACGCCTCCTATATGGAAGCGGTACAAGGGCTTGAGGCGTAGGCCATGGGGGAAGTTCGGGGCAGAGATCAGAGATCCAAAAAAGAATGGCGTTAGAGTTTGGCTTGGAACTTATCTGACCGAGGAGGAAGCAGCTCTGGCTTACGACAAAGCTGCTTTTAAGATGCAAGGCCCAAAGACCAAACTTAATTTTCCCCACCTCATTGGCACTGACGTGTTAACGTCTGAGCCAAAGAGGGAGGTGGTTTTGAAACGGGAATCGCTGGAGCCTTCTTCATCGGAGGGAAGTTGTGAGTCATCATCACTAGGGTCAAAGAGGAGGAGGGGCATGGTTGACCTACTTAACAAATTAGCCAAGAATAGAAGCCAATCCATGGTGGTTGACATTGAAATGGCCTCATCACAGGCAAATGATATTGAGCAATGGGTGAATGAGTTGAGTGATTGCTCTTAG 615 0.4537 MASSTTKDLDFEYLEHIQQYLLFDDSSMLESHQPFPSPKSDNDSNTTVEAREVSTPPIWKRYKGLRRRPWGKFGAEIRDPKKNGVRVWLGTYLTEEEAALAYDKAAFKMQGPKTKLNFPHLIGTDVLTSEPKREVVLKRESLEPSSSEGSCESSSLGSKRRRGMVDLLNKLAKNRSQSMVVDIEMASSQANDIEQWVNELSDCS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2968 204 MobiDBLite consensus disorder prediction 30 52 - -
Mal3g2968 204 PANTHER DNA-BINDING DOMAIN 4 177 IPR044808 GO:0003700|GO:0009873
Mal3g2968 204 MobiDBLite consensus disorder prediction 30 53 - -
Mal3g2968 204 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Mal3g2968 204 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 MobiDBLite consensus disorder prediction 143 157 - -
Mal3g2968 204 MobiDBLite consensus disorder prediction 138 159 - -
Mal3g2968 204 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Mal3g2968 204 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 4 177 - -
Mal3g2968 204 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2968 Mal-Chr3 104419473 104420087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2968 61 148 AP2-EREBP Transcription Factor Family AT2G44840 64.773 1.86e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal3g2968 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2968 K09286 - gmx:102663872 231.106