Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2966 ATGTTTTCTACCACCAAAGACTTAGAGTTTGCATATTTGGAAGATATTCAACAATACCTTCTTCATGATGATTCCAACATTCATACATCACATCAAAAAATTCAACAAAGCCCTAACAATGATTCAAAGACAACTGCATCTACGCGTGAAGTGAACGCGCCTCCCACATGGAAGCGCTACAGGGGAGTGAGGCGTAGGCCGTGGGGAAAGTTTGCGGCAGAGATAAGAGACCCGAAAAAAAATGGTGCTAGGGTTTGGCTTGGTACTTATGTGACCGAGGAGGAAGCAGGTTTTGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAGGCCAAGCTCAATTTTCCCCACCTCATTGGCTCGGATGTGTACATGTCCGAGCCAAAGAGGGAGGTGGCCTTGAAACGGGAATCTCCGGGGTCTTGTTCTTCATCAGAAGATAGTTGCGAGTCATCGTCACCATGGTCAAAGAGGAGGAGGAGGAGCATGGTTGACCTACTTAACAAATTAGCCAAGAATAAAAGCCAAGCCATGGTGGCTGAAAATGAAATTGCCTCACAAGAAAATGCTATTGAGCAATGGGTGAATGAGTTGAGTGATTGCTCTCTATTATGGTGTTCTTAA 627 0.4514 MFSTTKDLEFAYLEDIQQYLLHDDSNIHTSHQKIQQSPNNDSKTTASTREVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAGFAYDKAAFKMRGQKAKLNFPHLIGSDVYMSEPKREVALKRESPGSCSSSEDSCESSSPWSKRRRRSMVDLLNKLAKNKSQAMVAENEIASQENAIEQWVNELSDCSLLWCS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2966 208 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 MobiDBLite consensus disorder prediction 137 157 - -
Mal3g2966 208 Coils Coil 164 198 - -
Mal3g2966 208 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 177 - -
Mal3g2966 208 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Mal3g2966 208 PANTHER DNA-BINDING DOMAIN 1 177 IPR044808 GO:0003700|GO:0009873
Mal3g2966 208 MobiDBLite consensus disorder prediction 29 51 - -
Mal3g2966 208 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Mal3g2966 208 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2966 Mal-Chr3 104409770 104410396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2966 37 166 AP2-EREBP Transcription Factor Family AT2G44840 55.303 5.18e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g2966 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2966 K09286 - gmx:102663872 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0097 5 2026476 2027121 Mal3g2966 3 104409770 104410396 PCT