Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2929 ATGCCTCCGAAAGTGGTGAAAAGAGGTTCTGCGGCAAAGAAAGCGAAGGTTTCTTCAAAAGCCGCAATTCAGAATCAGCAGCAAGAACCTGAACCTGTCAAGAATCTTGAAGATAATCTTGTTGTTGACGCTATGGCGGAGGAGAATTCCGTTGAAACAGTGCCTAATGGTTTAACTGTGGTGGAAAACAATGGAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGACGAACACTTAGATTTTGAGGATAATTATCATGAGTATGATCCTGAGTATGTTGGTGATGACTATGATGAGAGGGGAATTGAACAAGACGAAGGTCAGGAGGTCGGAGATGAAGTGGAGGAAGAACCTGAAGAGAATGTGGATGAAGAACCTGAAGAGAATGTGGATGAAGAACCTGAAGAGAATGTGGATGAAGAAGAGGGTGATACAGGTGATGAGGAAGTTGAAGAAGTTGAATATGTATATGAAGAAATTGAGGGTGATGATGATGATGTTGCTGGTGATGATGAGCATGCCAGTGAGGAGAATGTGCATGAGCATCTGGCTGATGTAAAGGAAGAGGAGCAAGCTGAAGTTAGAAAGGAGACGCAGAAGCAGAATGAATTGGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACAGAGCATGATCTGAGGAAGGCTTTCAGTAAAGTTGGGGAGATTACTGAAGCCAGGCTGATGATGAATCCTCAGACTAAAAGGAACAAGGGATTTGCATTATTGCGTTTCGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTATCACCACATGTCAGGACAATGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACAATGAGGGAACGAACTGTGGATTTGCATTTTTGGAATTTTCATCTCGTTCAGATGCTAAGGAAGCCTATAAGCGATTGCAGAAGACAGATGTTGGTTTTGGAGTTGATAAGCCCGCAGAGGTTTCCTTTGCAAACTCCTTTACTGACCTTGGTGATGATATTATGGCACAGGTTAAAACTGTATTCATTGATTTACTGCCTCCTTCATGGGATGAAGATTATGTCCGAGCTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACATGCGAGGTGCTCGCAGGAAGAATTATGGATTTGTCACGTTTGGTACGCATGCTGCTGCTGTGGAATGTGCTGAGAGCATTACCAGTGCAGGGTTAGGCGAAGGCAACAAAAAGGCAAAAGTTAGGGCTAGATTGTCGAGACCTCTTCCGAAAATTCGTGGTAAACATGTTACTCACAGGGACATTTCTAGCCGCAAGTTTGGAAGATTGGCAAGGCCTTCACACAGTCGACCTGCACCACGGAGTCGACCTGTGCCACGGAGTCGACCTGCACCACAGAGTCGACCTGCTCCTGTGTTCAGAAGACTTGGGAGTCGCATTCCACCAGTTAGACCTTCTAGTGTGAGAAATAGACGTCCTGTCACATCGATGCCAGTAAGAGCTAGGCCAGCCACTCCTCCAGCTAGATCCCACAGGAGATTATCAGCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGATCGACCGGTGGATCTGCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGAGGCCTCTCAAAGACGTCCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACCCTGACCTGCATAGGAATACATCTCGTACTGCACCAAGGAGGGGTTATCTGGATGATGGTTATGATCAAAGACTGGAAAGGCCTCCTTCTCCATCTCCCCGTCTAAGTTATCGCGAAGGACGCCCCCGCGATTATGACACACTATCTGGCTCGAAACGTCCTTATGCTGCCATAGATGATATTTCTCCACGGTATGCTGATGCGGGTGTTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGCAGTGCTTCCCGATATAGACAGGCTTATGGTGATAGGCTTGGAAGATCTAGTTTGGAATATAAAAGTGGCAGTAGAAGTTCTATACCTATTCAAAACTCCCATGGGGCGTATAGCAGTCGACATGACACAAGTTATGGTGGAGGTTCTCTTGGTGTTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGTGATTACTTATCTCGTGGAAGTGATGTTGGTGGCAGCTCTTATTCGTCCATGTATTCTAGTAGGGGTATGAACGGTAGTAGCAGTTATTTGAGTGGTAGCGGTGGTGGATCTAGATCCTATTATTGA 2397 0.4443 MPPKVVKRGSAAKKAKVSSKAAIQNQQQEPEPVKNLEDNLVVDAMAEENSVETVPNGLTVVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEYVGDDYDERGIEQDEGQEVGDEVEEEPEENVDEEPEENVDEEPEENVDEEEGDTGDEEVEEVEYVYEEIEGDDDDVAGDDEHASEENVHEHLADVKEEEQAEVRKETQKQNELEVFVGGLDKDATEHDLRKAFSKVGEITEARLMMNPQTKRNKGFALLRFETVEQVKRALAELKNPVINGKQCGITTCQDNDTLYLDNICKTWKKEALKEKLKHYGVESFKDLTLVEDGNNEGTNCGFAFLEFSSRSDAKEAYKRLQKTDVGFGVDKPAEVSFANSFTDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGEVEKVELAKNMRGARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKIRGKHVTHRDISSRKFGRLARPSHSRPAPRSRPVPRSRPAPQSRPAPVFRRLGSRIPPVRPSSVRNRRPVTSMPVRARPATPPARSHRRLSAAYPKSSMKRDYDRPVDLPPPRSRVSADYGSQEASQRRPSYRDYPARDSGYPDLHRNTSRTAPRRGYLDDGYDQRLERPPSPSPRLSYREGRPRDYDTLSGSKRPYAAIDDISPRYADAGVRQSRSRLDYDYGGSASRYRQAYGDRLGRSSLEYKSGSRSSIPIQNSHGAYSSRHDTSYGGGSLGVSDGGIYSSSYGGDYLSRGSDVGGSSYSSMYSSRGMNGSSSYLSGSGGGSRSYY* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2929 798 MobiDBLite consensus disorder prediction 62 153 - -
Mal3g2929 798 MobiDBLite consensus disorder prediction 66 99 - -
Mal3g2929 798 Gene3D - 376 471 IPR012677 -
Mal3g2929 798 CDD RRM_SF 208 279 - -
Mal3g2929 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 383 465 IPR000504 GO:0003723
Mal3g2929 798 MobiDBLite consensus disorder prediction 496 510 - -
Mal3g2929 798 SMART rrm1_1 207 280 IPR000504 GO:0003723
Mal3g2929 798 SMART rrm1_1 287 366 IPR000504 GO:0003723
Mal3g2929 798 SMART rrm1_1 384 459 IPR000504 GO:0003723
Mal3g2929 798 Gene3D - 160 281 IPR012677 -
Mal3g2929 798 PANTHER RNA RECOGNITION MOTIF 127 798 - -
Mal3g2929 798 MobiDBLite consensus disorder prediction 599 635 - -
Mal3g2929 798 CDD RRM_SF 385 459 - -
Mal3g2929 798 MobiDBLite consensus disorder prediction 1 35 - -
Mal3g2929 798 MobiDBLite consensus disorder prediction 713 735 - -
Mal3g2929 798 MobiDBLite consensus disorder prediction 766 798 - -
Mal3g2929 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 370 IPR000504 GO:0003723
Mal3g2929 798 SUPERFAMILY RNA-binding domain, RBD 286 443 IPR035979 GO:0003676
Mal3g2929 798 MobiDBLite consensus disorder prediction 464 666 - -
Mal3g2929 798 Gene3D - 285 369 IPR012677 -
Mal3g2929 798 MobiDBLite consensus disorder prediction 100 153 - -
Mal3g2929 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Mal3g2929 798 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 131 - -
Mal3g2929 798 PANTHER RNA RECOGNITION MOTIF 1 131 - -
Mal3g2929 798 SUPERFAMILY RNA-binding domain, RBD 207 310 IPR035979 GO:0003676
Mal3g2929 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Mal3g2929 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 443 IPR000504 GO:0003723
Mal3g2929 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 355 IPR000504 GO:0003723
Mal3g2929 798 MobiDBLite consensus disorder prediction 19 33 - -
Mal3g2929 798 Coils Coil 58 78 - -
Mal3g2929 798 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 127 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2929 Mal-Chr3 103719937 103724739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2929 202 431 Eukaryotic Initiation Factors Gene Family AT1G49760 20.921 9.03e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2929 - - gmx:100808583 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0151 5 2805661 2809898 Mal3g2929 3 103719937 103724739 PCT