Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2917 ATGTTTTCTCTTTTTCGGAAAAACCTCCCTTTTTGTCGTTCCTCCTCCTCATCATCGCAAGTTCTCAAGTTTTTTAATAGGTTTAAAGCGCGTGAGTTCTCATCTTCACCTCCTCCCTCCGAAGCTGTCAAGGTTTTTGCATGGTGGGATGTTGACAGTTGTGGAGTGCCTTCTGACGTTAGCTTTTCTAAGGTAGCACCTTCAATTATAGCAGCCCTTAGAGCTAACGGGATCATGGGTGAGGTTAAGATTCACGCTTGGGTCGATTATTATTCTCCAAAGGTCGACAACAAGGCAAGAGAGACACTTGAATCAACTGGCATTTCTCTCCGGCCCATTTCTGTAGCTGAAAATAACAACAATTCCTATAAATGTGTTCTTATGAATCTTGAGGATTGGCTTCGCTGGAATCCTCCACCCGCACACCTCCTTTTCATATTTGGTGATGTATACTTCTCTGGAATATTGAATAAGTTAAGAATGCGTAACTACAATATCTTGCTTGCATGTCCAGAAAGGCCTCATGTTGCTCTCTGCCATGCAGCAACTATAATGTGGCAATGGTCTTCGATGCTCAAGGGGGAAGATCTTATAGGAAAACATTTCAACTATCCTCCTGATGATCCGTTTAATTCTTGGTATGGAAACTCAAATGTGCCTCTTAAAAACCCATTCTCAGTTGCTGAGCTGCACACATCATCACAAAATGCGGAGATTTACAAACCTTCCTCGGACATAAAGGTAGGTGAAGCTTCAAAATCAGTTTCTAGGCAGGTCATGAAGATATTGAGTTCGCACCCGAAAGGGATCTCCATTGGAGACCTTCGTGCAAAATTGACTAAGTGTGATCCGCCTTTGGGTAAACGCTTCTATGGATATAAAAAGTTTTCCAACATTCTAATATCTATACCACATTTACAACTCGAGTATTTAGGAGAAGGTAATTTTTGGGTGTGTTTGGTCTCAACAAGGACATCAACTATTAAGAACAAGCAGGAGGACACCACTACAACTCAAAAGCTACACAATGATGTTAGTCATCCTCGGCAACCTCATTGGGATAACATTAGGGTTTCAGTATGGTGGGACTTCGACAGTTGTCCCGTCCCTTGCGACGTTAGCTTTTTAAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGGGATTAAGGGCCCTATTCATATTGACGCTTATGGCGATGTTTCTCATCTTTCAGAGATCCAACAAGAAGCACTTTCCTTCTCCGGCATTGATCTCCACCACATTTACGGTGGAAAGAAAAACTCTCATAAATGTCTTATGGATTGGGCTTGTCAAAATCCTCCACCCGGACACCTCTTTTTGATATCTGGTGATAGAGACTTATACTTCCGTGGCACAACGTACGATTTATGCAATAGTAAATTCAATATATTGCTTGCATGTCCAAGAATGACTAATTTACTTAGCCACCCTGTTGAAACCATAGTGTGGCAGTGGTCTTCAATGCTCAAGGGGAAGTATCTTACTGGAAAATATTACGGTGATCCCCCTCGTTGGTATATTAAGGTCCCTCATGAATATCCTCCTGAGTGGTATAGAAACTCTAAGGTGCTTCTTGAAAACCCCTTCTCAACTTTTGAGGAGCCCACATGTTCAAAAAATGCAGAGATCCACGAACCTTCCTCGTACATAAAGTTAGTTGAAGTTCCAAAGTCACTTTGCAGGAAGGTTAGGAAGATATTGAGTTCGTACCCGAATGGGATCGCCATTGGAGATCTTCACTTACAATTCAAATTGAGTTATTTGTACACTTTGAGTAAAGACTTTTATACACAAAAAGAGTTTTCCAACATTCTAGTATCTATACCACATGTACAACTCCTGTATGTAGGAGAAGGTGAATTTTGTGTGCGTTTGAATAAGGAAAGGCCAGTTAAAAATAAGCAGAAGGGTGTTGATCATCCAGGAATGCCTGCATTGTTTTCTAGTGGTTCCTTTTGGGATGATGTAGAATCTTTTGTTTTCACATCCAGAGGATCACGTCTTATTTCCCGGTCAATAAGCAGGGAGGATCTGGCTCATAAATTACAAAAGCATGGAACCTTGTCTCTTATGTCTCTCACTAGAAATGATATCCTTCAATTGGTGGAATTGTTGATAGCAGAGAAGAAATGGTTAGAGGAAAGCCCCTCACAAGCATTTCCTTTTAGGCTAACTCGATTAGTTCATAAGAGCTCATTGATTGGCTGTCATACCCCTATTTTTGACCCGAACTTATCCTGGTCCATCAAATGTTTTGCCTAG 2292 0.4114 MFSLFRKNLPFCRSSSSSSQVLKFFNRFKAREFSSSPPPSEAVKVFAWWDVDSCGVPSDVSFSKVAPSIIAALRANGIMGEVKIHAWVDYYSPKVDNKARETLESTGISLRPISVAENNNNSYKCVLMNLEDWLRWNPPPAHLLFIFGDVYFSGILNKLRMRNYNILLACPERPHVALCHAATIMWQWSSMLKGEDLIGKHFNYPPDDPFNSWYGNSNVPLKNPFSVAELHTSSQNAEIYKPSSDIKVGEASKSVSRQVMKILSSHPKGISIGDLRAKLTKCDPPLGKRFYGYKKFSNILISIPHLQLEYLGEGNFWVCLVSTRTSTIKNKQEDTTTTQKLHNDVSHPRQPHWDNIRVSVWWDFDSCPVPCDVSFLNVAPSIMGVLRANGIKGPIHIDAYGDVSHLSEIQQEALSFSGIDLHHIYGGKKNSHKCLMDWACQNPPPGHLFLISGDRDLYFRGTTYDLCNSKFNILLACPRMTNLLSHPVETIVWQWSSMLKGKYLTGKYYGDPPRWYIKVPHEYPPEWYRNSKVLLENPFSTFEEPTCSKNAEIHEPSSYIKLVEVPKSLCRKVRKILSSYPNGIAIGDLHLQFKLSYLYTLSKDFYTQKEFSNILVSIPHVQLLYVGEGEFCVRLNKERPVKNKQKGVDHPGMPALFSSGSFWDDVESFVFTSRGSRLISRSISREDLAHKLQKHGTLSLMSLTRNDILQLVELLIAEKKWLEESPSQAFPFRLTRLVHKSSLIGCHTPIFDPNLSWSIKCFA* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2917 763 CDD PIN_limkain_b1_N_like 357 478 - -
Mal3g2917 763 CDD LOTUS 253 320 - -
Mal3g2917 763 PANTHER LIMKAIN B LKAP 354 640 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g2917 763 ProSiteProfiles OST-type HTH domain profile. 251 322 IPR025605 -
Mal3g2917 763 PANTHER LIMKAIN B LKAP 644 745 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g2917 763 CDD PIN_limkain_b1_N_like 44 171 - -
Mal3g2917 763 Pfam OST-HTH/LOTUS domain 253 317 IPR025605 -
Mal3g2917 763 PANTHER EMB|CAB71880.1 12 344 - -
Mal3g2917 763 Gene3D - 250 321 IPR041966 -
Mal3g2917 763 Pfam NYN domain 47 182 IPR021139 GO:0004540
Mal3g2917 763 Pfam NYN domain 357 475 IPR021139 GO:0004540
Mal3g2917 763 PANTHER EMB|CAB71880.1 354 640 - -
Mal3g2917 763 PANTHER EMB|CAB71880.1 644 745 - -
Mal3g2917 763 PANTHER LIMKAIN B LKAP 12 344 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2917 Mal-Chr3 103583575 103591094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2917 357 501 C2H2 Transcription Factor Family AT5G61190 37.662 8.75e-20 92.8