Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2867 ATGGCCTCTATGAACTTGTTAGGTTTCTCTCTTTCTTCACAAGAACAACATCCATCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGGTTCAACCCTGATGAAATCTCAGGTTCTGATGTTCAAGGAGATCACTGCTATGATCTCACTTCTCACACAACTCCTCATCATTCACTCAACCTTTCTCATCCTTTTTCCATTTATGATGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGGAGAACTACAACAACCAAAACCTACTATTGGGAACATCATGCATGAATCAAAATGTGAACAACAACAACCAACAAGCACAACCAAAGCTAGAAAACTTCCTCGGCGGACACTCTTTTACCGACCATCATGAATACGGTGGTAGCAACTCATACTCTTCATTACACCTTCCGGCTCATCAGCCGGAAGGTTCCTGTGGTGGTGACGGTGGTGGTGGTGATGGTAGCACAAATAACAATAATAACTCCATAGGTTTATCAATGATAAAAACATGGCTCAGAAACCAACCACCACCGGAAAACAACAACAATGAAAGTGGTGCACGTGTGCAGACACTATCACTCTCTATGAGTACTGGTTCACAGTCAAATTCATCGGTTCCTATTCTCAATGCAAATGTGATGAGTGGTGAGATTTCCTCATCGGAAAATAAACAACCACCCACAACTGCAGTTGTACTCGAAAGCAACCAAACAGGTGTCGTTGAAAGTGTTGTCCCTAGAAAATCCATTGATACATTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGATGGACAGGGAGATATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCGCTAAAATATTGGGGAACAACTACTACAACAAATTTTCCTATTAGCCATTATGAAAAAGAAGTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACGAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAAGCAGCAGAGGCATATGATGTAGCAGCAATAAAATTCAGAGGACTTAGTGCAGTTACAAACTTTGACATGAGCAGATACGATGTTAAAACCATACTTGAGAGCAGTACTTTACCAATTGGTGGTGCTGCAAAGCGTTTAAAAGACATGGAGCAAGTTGAGTTGAATGTGAATCATGTGGATATTAGCCATAGAACAGAACAAGATCATAGCATCATCATCAACAATACTTCCCATTTAACAGATCAAGCCATCAATAACAATTATGCAGCAACAAATGCATCTAATTGGCATGCTCTTTCATTCCAACAACAAAACCCTTACAATACCAACAACATGCAATTGCAGCATTATCCTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAGTACTTATACTACTACTACTGATCATATTCATCATCAACAACTACAGTTAGGGAATAGTAACAGTAATACTCACAATTTCTTTGGTTTGCAAAATATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGATCAAACTCTGTTGTTTATGGTGGTGGAGATCATGGTGGTTATGGAGGAAATGGTGGATATATGATTCCAATGGCTATTGCAAATGATGGTAATCAAAATCAAAGAAGCAACAATAGTTTTGGTGAGAGTGAGATTAAGGGATTTGGTTATGAAAATGTTTTTGGAAATACTACTGATTCTTATCATGCACATGCAGCAAGGAACTTGTACTATCAGCAGCAACAATTATCTGTTGATCAAGGATCAAATTGCAATAATAATAATAATTGGGTTCCAACTGCTATTCCAACACTTGCTCCAAGGACTACCAATGTGTCTCTTTGTCCACCTTTCACTTTGTTGCATGAATAG 2103 0.3966 MASMNLLGFSLSSQEQHPSTQDQTVASRFGFNPDEISGSDVQGDHCYDLTSHTTPHHSLNLSHPFSIYDAFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNVNNNNQQAQPKLENFLGGHSFTDHHEYGGSNSYSSLHLPAHQPEGSCGGDGGGGDGSTNNNNNSIGLSMIKTWLRNQPPPENNNNESGARVQTLSLSMSTGSQSNSSVPILNANVMSGEISSSENKQPPTTAVVLESNQTGVVESVVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELNVNHVDISHRTEQDHSIIINNTSHLTDQAINNNYAATNASNWHALSFQQQNPYNTNNMQLQHYPYGTQTQKLWCKQEQDSDDHSTYTTTTDHIHHQQLQLGNSNSNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGGDHGGYGGNGGYMIPMAIANDGNQNQRSNNSFGESEIKGFGYENVFGNTTDSYHAHAARNLYYQQQQLSVDQGSNCNNNNNWVPTAIPTLAPRTTNVSLCPPFTLLHE* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2867 700 CDD AP2 364 425 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 SUPERFAMILY DNA-binding domain 262 331 IPR016177 GO:0003677
Mal3g2867 700 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677
Mal3g2867 700 ProSiteProfiles AP2/ERF domain profile. 263 329 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 Pfam AP2 domain 365 415 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 Pfam AP2 domain 263 321 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 MobiDBLite consensus disorder prediction 128 167 - -
Mal3g2867 700 CDD AP2 262 331 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 MobiDBLite consensus disorder prediction 1 24 - -
Mal3g2867 700 Gene3D AP2/ERF domain 263 331 IPR036955 GO:0003700|GO:0006355
Mal3g2867 700 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700|GO:0006355
Mal3g2867 700 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 610 - -
Mal3g2867 700 SMART rav1_2 365 429 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 SMART rav1_2 263 335 IPR001471 GO:0003700|GO:0006355
Mal3g2867 700 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2867 Mal-Chr3 102922244 102925879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2867 166 608 AP2-EREBP Transcription Factor Family AT5G17430 54.204 1.70e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal3g2867 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2867 K09285 - gmx:100797584 853.973