Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2802 ATGTCCTCTCCACACAGTTACTTCACCAATCTTGGCCTTGGCTACTCCATAGCCATAACCCTAGCTTTTCTCGTCCTCCTCGCCACTCTCATCCTCTCTTTCTACCTCTGTTGCCGCAACAACAACAACAACAATAACAACCACATCAACAACAATAATCTCAACAACAATCCCAACAACAATACTCTCAACTACGCAGAGGGTGTCATTGTACGAAGTGACATCTTCATAGCTGAAAACGATGAAGAAAACCCTGTGGTGGGTCTAGAAGACAACGTGATAAATTCGTATCCGAGGTTTCAGTTCAGCAGAGACAGCGCAACTGTTTTGGGACAGAACACAACATGTTCTATATGTTTGTGTGAGTACAAAGATTCTGAGATGCTTAGGATGATGCCTGAGTGTCGTCATTACTTTCATCTATGTTGTCTAGATTCTTGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCGACGCCGCTTTCTACTCCACTTCAAGAGGTTGTTCCGCTTTCTCGGTATGGTGATGATCGGAGACGAAGGAGGTGA 564 0.4521 MSSPHSYFTNLGLGYSIAITLAFLVLLATLILSFYLCCRNNNNNNNNHINNNNLNNNPNNNTLNYAEGVIVRSDIFIAENDEENPVVGLEDNVINSYPRFQFSRDSATVLGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSRYGDDRRRRR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2802 187 Pfam Ring finger domain 115 158 IPR001841 -
Mal3g2802 187 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Mal3g2802 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Mal3g2802 187 PANTHER RING-H2 FINGER PROTEIN ATL67 3 186 IPR044289 GO:0016567|GO:0016740
Mal3g2802 187 PANTHER RING-H2 FINGER PROTEIN ATL67 3 186 - -
Mal3g2802 187 SUPERFAMILY RING/U-box 115 163 - -
Mal3g2802 187 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2802 Mal-Chr3 102151680 102152243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2802 12 178 C3H Transcription Factor Family AT5G06490 36.364 2.07e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2802 - - lja:Lj1g3v2807930.1 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2802 3 102151680 102152243 Mal3g2802 3 102151680 102152243 ECH
Mal3g2802 3 102151680 102152243 Mal5g1260 5 22210914 22211465 PCT