Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2747 ATGGAAGAAACAGAAGAGAGGGAGGAAAATGCAGAACCAGAACCAAACAACCTTCGTCCGGAAAATGAGAAAGAAGAAGAAGAATCCAACGCGGTGGTGGTGGTGGAGGAGATTCAACGAGTCATAGAATTGGTGGTTCAATTCGGCGAATACAGAAGAACACAAAGGAAAGAATCGCACAACCTTGCTCGTCGTTTCAAACACATGTTGCCTCTTATGGAAGACCTTCGTGACCTTCATCACTCTGTTCCTCAAAACGGTGTCGTTTGGTTGATGAACCTTAGGGATGCACTTTTGTTTGCCAAAGACTTGTTAAAATTGTGTAGCCAAGGAAGCAAAATTCACCTCGCAATGGAGGGTGAGGCAGTTATGATCAAATTTCAGAAGGCTTATGAAAAATTAAGCCAAGCTTTTGATGGTGTGCCTTGTGATGAATTAGGGATATCTGATGAAGTAAAAGAGCAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAGCTAGCAATGGATATGATGGTGGTGTTCTCCAACGAAGATGATCGTAATGCCGATAGTGCCATTATCGAAAGGCTTGCAAAAAAGTTGGAGCTTCACAGTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGAAAACAATGTGAGAGTACAAACAAAATAATTGACCTTCTTAACAGATTCAAAAGGATTGCAGGTATGGAAGAAACCGATGTCGTACTTAATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATAACACTTGAAATCATGACAGATCCTGTTATTATTGCAAATGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCAAATCACAAAACCTGCCCAAAGACAAGGCAACCTTTGGAACATCTTCAATTAGCACCAAACCGTGCCTTAAAAAACTTAATTGCTGAATGGTGTGAGAACAACAACTTCAAACTACCAAAAATCTACACTTCATCATGTCAAGAAACCTCTCCCACTGAAAACCAAGAAGAAATTCCATCTTTAGTTGAAAGCCTATGGTCTATCAATTTAGAACATCAGAGAAAGGCGGTCGAGAGAATCCGCATGTTATCAAAAGAAAATTCAGAGAACAGAATTTTAGTCGCCGAACACGGAGGAATACCACCATTAGTACAAATCTTATCATATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAACTTATCAATTGATGAAACTAACAAAAAACTTATATCAAAAGAATGTGCTATTCCAGCTATAATAGAAGTGTTGGAAAATGGAAATATTGTGGCTAAAGAAAATTCAGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAACAAAGAGATTGTAGGAATATCAAATGGGATTCCACCTTTGGTAGATTTATTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTCAGCTTATCATTAAACCATGCAAATAAAGAGAGAGCTATAAAAGCTGGAATTGTTACAGCTTTACTTGAATTGTTAAAGGACAGAAACTTGGGAATGGTTGATGAAGCACTGTCTATTTTGTTGCTACTTGTGTTGAATCCTGAAGGGAGGCATGAGGTTGGACAATTATCATTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCTAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCATCTTTTACTTTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTAATTGAGATTAAACAAAGTGGTACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGACCTCATAAAAAGGAGTGAGCAAATTTAA 1953 0.383 MEETEEREENAEPEPNNLRPENEKEEEESNAVVVVEEIQRVIELVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLHHSVPQNGVVWLMNLRDALLFAKDLLKLCSQGSKIHLAMEGEAVMIKFQKAYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSNEDDRNADSAIIERLAKKLELHSVEDLEVETVAVGNLVRERKGKQCESTNKIIDLLNRFKRIAGMEETDVVLNGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIIANGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNRALKNLIAEWCENNNFKLPKIYTSSCQETSPTENQEEIPSLVESLWSINLEHQRKAVERIRMLSKENSENRILVAEHGGIPPLVQILSYPDSKIKEHAVTALLNLSIDETNKKLISKECAIPAIIEVLENGNIVAKENSAAALFSLSMIDENKEIVGISNGIPPLVDLLQNGTVRGKKDAATALFSLSLNHANKERAIKAGIVTALLELLKDRNLGMVDEALSILLLLVLNPEGRHEVGQLSFIETLVEFTREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYEHLIEIKQSGTNRAQRKANAILDLIKRSEQI* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2747 650 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Mal3g2747 650 PANTHER U BOX DOMAIN-CONTAINING 25 648 - -
Mal3g2747 650 MobiDBLite consensus disorder prediction 1 30 - -
Mal3g2747 650 SUPERFAMILY RING/U-box 276 353 - -
Mal3g2747 650 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Mal3g2747 650 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 25 648 - -
Mal3g2747 650 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Mal3g2747 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Mal3g2747 650 SUPERFAMILY ARM repeat 369 641 IPR016024 -
Mal3g2747 650 MobiDBLite consensus disorder prediction 11 30 - -
Mal3g2747 650 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515
Mal3g2747 650 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Mal3g2747 650 Gene3D - 354 648 IPR011989 -
Mal3g2747 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Mal3g2747 650 SMART arm_5 482 522 IPR000225 GO:0005515
Mal3g2747 650 SMART arm_5 564 604 IPR000225 GO:0005515
Mal3g2747 650 SMART arm_5 523 563 IPR000225 GO:0005515
Mal3g2747 650 SMART arm_5 400 440 IPR000225 GO:0005515
Mal3g2747 650 SMART arm_5 441 481 IPR000225 GO:0005515
Mal3g2747 650 Gene3D - 30 142 IPR036537 GO:0007166
Mal3g2747 650 Coils Coil 149 169 - -
Mal3g2747 650 CDD RING-Ubox_PUB 281 323 IPR045210 -
Mal3g2747 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2747 Mal-Chr3 100925318 100928595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2747 34 650 U-box Gene Family AT5G42340 61.935 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2747 - - cam:101489704 1036.94