Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2729 ATGCAATCTAGCGGCGGCGCCGGCAGTGGGCCTGGCCGGAATTCGGCGGGGCGGGCAGCTTCGACGTCGTCAGCGGCTGCATCGCCGACTTCTTCGTCTTCGGCGGCTTCTCATATGGGATTGGACTCATTGCAGCATCAACAGCAGATGATGGGTGGTTCTAGACAGCCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAGTGAAGCAGTGCTGGCATATCAAGCAGGGCTTCAAGGAGTATTTGGGAATAACAATTACTCATCTCCTACTGCCATGCAATTGCCTCAGCAGTCTCGAAATTTTTTTGATTTAGCTCAGCATGGGCCTAACCAGGGTCAAGGCATTGAGCAGCAGATGCTAAATCCTGTCCAACAAGCATACTATCAATATGCTCTCCAGAGTTCTCAACAAAGACATGCTTTGGCTATGCAGTCACAGCAGCAACCTAAAATGGAGATGTCAGGCCCCACATCTATTAAGGATCAAGAAATGCGAATGGGAAATTTTAAGTTGCAGGACCTTATGTCTATGCAGGCAGTGAATCACGGCCAAGGATCATCTTCTAGGAATTCATCTGAACATTTTTCTCGTGGTGAAAAGCGGGTAGAGCAAGGACAGCAGCTAGCTCCCGATAAGAAGAACGAAGGAAAACCCGCAACTCAGGGACTAGCCATCGGACACTTGATGCCCGGGAATAGTATTAGGCCTGTGCAAGCTGTACTGACTCAGCAGATCATCCCAAATGCTATGAACAACCAGCTTGCAATGTCTGATCAACTCCGAGCTATGCAGGCATTGGCACATGAACGGAATATTGATCTATCACAACCTGCAAATGCTCACTTAGCGGCTCAGCTCATTCCCTTGATGCAATCAAGGATGGTTCAACAATCAAAGGAAAACAATACTAACATGGGTGCTCAGTCATCCTCTGTCCCCGTGTCAAAACAGCAGGCTACTTCTCCGGCAGTTGCAAGTGAGGGATCTGCTAATGCTAATTCATCTAGTGATGTACCTGCCCATGTAGGATCTGTGAAAGCCAGGCAGACAGCTCCACCCAGTCATTTGGGCTTACCCATCAATGCTGGTGTGGCTGGTAACTCCAATGACATGCCAGTGCAGCAATTCAGTCTTCATGGTAGAGATACTCAAGGATCATTGAAGCAATCGGTTGTAGGTGGAAATGGAATGCCTTCTATGCATCCACAGCAGAATTCTGCAAACATGAACTTAGGTGCAGATAGTTCTTTGAAAGTAAAAGCTTCATCATCTGGATCTGGTCCAGAACCTGCAAAAATGCAGTATGCCAGGCAATTAAACCAACATGCTTCCCAGGCTGGAGGGCCCACAAAGGAAGGGGGCTCTGGAAATTACACCAAACCTCAAGGGGCACCATCTCAGATGCCTCAAAAACTAAATGGTTTTACCAAACATCAGCTTCATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGCTGAAGAAAGGTGATGCTACACTTCCCCAAGAACTTCTTCAGGCCATTACTCCACCACCTCTTGATTTGCAAGCGCAGCAGCCAATTCACTCTGCAGGAGGACAGAATCAAGATAAATCTGTGGGAAATACTGTGGCAGAACAACCAAGGCAGAATGAATCCAATGCCAAGGATTCACGACCCATCATATCTTTTGATGGAAATTCTTCAAAGCAGGAAACTTTTGTAAGAGATCAGAAATCCACTGGAACAGAAGTTCATAAGCAAGCTATACTTCCTGTGACAAAGGTCTCTGCTGGAAAGGAAGAGCAGCACTCCGTTGGATGCTCTGCTAAGTCGGACAAGGAAATTGAACACGGGATTAACAGAGCTCCTGTTAGAAATGAGTTGGCATTAGATAAGGGAAAGGCTGTAGCTTCCCAGGATTCGGTAACTGACACTGTACAGATTAATAAACCTGCACAGTCAAGCACTGTTGGCCAGCCAAAGGATACAGGACCCGCACAAAAATACTATGGCCCGCTATTTGATTTTCCTTTCTTCACTAGGAAACACGATTCCTTTGGATCATCAATGATGGTAAACAACAACAATAATTTGTCACTGGCATATGATGTAAAAGAGCTTCTTTATGAGGAAGGCACTGAAGTCTTTCACAAGAGAAGAACGGAGAATTTAAAGAAGATTGAAGGATTACTTGCGGTAAACTTAGAGAGGAAAAGGATTAAGCCAGATCTTGTGTTGAAGTTGCAAATTGAAGAGAAAAAGCTGCGCCTTTTAGATCTTCAGGCACGTTTAAGAGATGATATTAATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTGTGTGAACGTCAGCGTGTGGAACTCGCTAGACAAGTGCAGACATCTCAGAAAGCTTTAAGGGAGAAGCAACTGAAATCTATATTCCAATGGCGCAAGAAGCTTCTTGAAGTTCACTGGGCCATTCGTGATGCTCGTACTGCTCGCAATAGAGGGGTGGCCAAATATCATGAGAAGATGTTGAAAGAGTTCTCAAAACATAAGGATGATGACAGGAACAGGAGGATGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAACAGACCAGCCTTCCAGGCGATGCTGCGGAGAGATACAATGTACTTTCAACTTTCTTAACCCAGACTGAAGAGTATCTCCAAAAATTAGGAAGTAAGATAACTTCTGCCAAAAATCAACAGGAAGTGGAGGAGGCAGCAAAAGCTGCAGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCAGCAACTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCAAATGATGGCTCGTCTTCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTGAATGAAAAAGTTTTAAGGCAACCATCAATGTTGCGGGCTGGAACACTGAGAGAGTATCAGATTGTTGGATTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTAGCTGATGAGATGGGTCTTGGCAAAACAGTCCAGGTTATGGCGTTAATTGCTTACTTAATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTTCCAAATGCCGTTTTGGTTAACTGGAAGAGTGAATTGCATACATGGTTACCATCTGTGTCATGCATTTTTTATGTTGGATCGAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGAGCAAAGCTTTCAAAAATTGATTGGAGGTATATCATAATTGATGAAGCTCAGAGAATGAAGGATAGAGAGTCAGTTTTAGCTCGTGATCTTGATAGATATCGGTGTCACAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTAAATCTACTTCTTCCTGAGGTTTTTGACAATAAGAAAGCCTTCAATGATTGGTTCTCGAAACCATTTCAAAAGGAAGATCCCAACCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAGGTTGAAGGCTCGCTGCCACCAAAGGTATCCATAGTCTTACGATGCAGAATGTCAGCCTTCCAGAGTGCCATTTATGACTGGATTAAATCAACCGGAACTCTTCGTCTTAATCCTGAGGAGGAGAAATGTCGGATGGAAAAAAGTCCGCTCTACCAGGCAAAACAGTATAAAACTTTAAATAACAGATGCATGGAGCTACGTAAAACTTGCAATCATCCATTACTTAATTACCCATTCTTCAGTGACTTATCTAAAGATTTCATGGTAAAATGTTGTGGGAAATTGTGGATGCTGGATAGGATTCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTGCTGTTTAGTACCATGACAAAACTCTTAGACATATTGGAAGAATACCTGCAATGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACAGCTTTGGAAGACCGTGAATCTGCTATAGTGGACTTCAATAGCCCTAATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGGGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGAATTGGACAAAAAAGAGAAGTCAAAGTTATTTACATGGAAGCTGTTGTTGACAAAATATCTAGCCATCAGAAGGAGGATGAAATGAGAAGTGGGGGCACTACTGATATGGAGGATGAGCTTGCAGGTAAGGATCGTTATATAGGATCCATTGAGAGCCTCATAAGGAGCAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACTCATGAAGAGAGACGTTTGACTTTGGAGACATTATTGCATGATGAAGAAAGGTGTCAAGAAACTGTTCACGATGTTCCTTCATTGCAGGAGGTAAATCGCATGATTGCTAGGAATGACGAAGAAGTTGAATTGTTTGATCAAATGGATGAAGAAGAGGATTGGCTTGAGGAGATGACTCGGTATGATCAGGTTCCTGATTGGATTCGAGCCAGTACAAGAGAAGTGAATGCTGCTATTGCTGCTTCATCAAAAAGACAATCAAAGAAGAACGCCTTATCGGGTGGTGATGTTGGCTTGGAATCAAGTGAAATGGGTTCTGAAAGGAGAAGGGGGCGACCAAAGGGAAAAAAGAATCCTAGTTATAAAGAGTTGGAAGAATCCGATGAAGAAATCTCTGAAGAAAGAAATGAAGATTCTGCACATGATGAAGGAGAGATAGGAGAGTTTGAAGATGACGGGTATAGCGGGGCTGATGGAGCTCAACTGGTGGATAAAGATAAGTTGGAAGATGTTACTCTTTCTGATGCTGAATATGAATGTCCTAGGTCTTCAGAAAGTGCTAGAAATAATCATGTGGTTGAAGGTGGTTCCTCAGCATCATCCGCAGACGGTAAAAGATTGATACAAACAGTGTCACCATCAGTTTCTTCTCAGAAATTTGCTTCCCTGTCTGCGCTGGATGCCAAGCCAAGTTCGGCCTCAAAAAGGATGGGAGATGATTTAGAGGAAGGGGAAATTGCAGTATCTGGTGAATCTCACATGTATCATCAACAGTCGGGAAGTTGGATTCATGATCGGGATGAAGGTGAGGAAGACCAAGTTTTGCAGAAACCCAAGATTAAACGTAAGCGTAGTCTTCGTGTTCGGCCTCGTCACACCATGGAAAGGCCCGAGGATAAGTCTGGCAGTGAGATGGCATCTCTTCAACGTGGAGTATCATCTCTTTTACGAGACAATAAATATCCATTGCAATCAAGGATCAACCCAGAATCAAAAACATTTGGAGATTCCAGTTCCAATAAGCATGATAAGAATGAATCAATATTAAAAAATAAGCGAAATTTACCTTCAAGGAAAGTAGCTAATGCATCCAAATTACATGTCTCACCTAAGTCCAGCCGTTTGAATTGCACATCCAGTCCTTCGGAAGATAATGGTGAGCACTCTAGAGAAAGTTGGAAGGGGAAGTCTAACAATTTACGTGGATCTTCAGCTCATAGCACTAAAATGAGTGAAATCATCCTGAGACGGTGCAAAAATGTAATTAGCAAGATCCAAAGGAGATTAGACAAGGAAGGCCATCAAATTGTACCTTTGCTGGCAGATTTATGGAAGAGGATTGACAATTCTGAGTTCGCTGGTGGTTCTGGGAACAATCTCTTGGATTTAAGAAAGATTGACCAGCGAATTGATAGATTGGAGTACACTGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTCATGTTGAAGAGTGCTATGCATTTCTATGGGTACTCATACGAGGTAAGAACTGAAGCAAGGAAAGTTCATGATCTCTTCTTTGACATCTTGAAAATCGCATTTTCCGATATTGACTTCGGAGAAGCAAAAAGTGCACTTTCCTTTACGAGTCAAATTTCTGCCAGCGCTGCAGCATCCTCAAAGCAAGCGAATGCTTTTCCAAGTAAGAGGAAGAGAGGGAAGAATGATATGGAGACTGATCCAATCCCTACACAAAAGCTGCTGCAACGTGGATCCACTTCCAACGGCGAAAGTGGCAGAATCAAAGTCCAATTGCCACAGAAGGTATCAAAAACTGGAAGTGGTAGTGGCAGTGCCAGGGAGCAACTTCAGCAGGATAGTCCTTCAATGCTCACTCACCCAGGTGACCTTGTTATATGCAAGAAGAAAAGAAACGAGAGGGGGGAAAAATCATCGGTGAAGCCTAGGATTGGTTCAGCTGGTCCTATTTCACCACCTAGCATGGTTCCTGCTATGAGAAGTCCAACTTCAGGGTCAGGTTCTACCCCTAGGGCTGGCCATGCACACACCTCAAATGGATCTGGCGGGTCAGCTGGATGGGCAAATCCCGTGAAACGGATGAGAACAGATTCTGGGAAGAGGAGACCGAGCCATATGTAG 6669 0.4341 MQSSGGAGSGPGRNSAGRAASTSSAAASPTSSSSAASHMGLDSLQHQQQMMGGSRQPFQQQLLRKPEGSEAVLAYQAGLQGVFGNNNYSSPTAMQLPQQSRNFFDLAQHGPNQGQGIEQQMLNPVQQAYYQYALQSSQQRHALAMQSQQQPKMEMSGPTSIKDQEMRMGNFKLQDLMSMQAVNHGQGSSSRNSSEHFSRGEKRVEQGQQLAPDKKNEGKPATQGLAIGHLMPGNSIRPVQAVLTQQIIPNAMNNQLAMSDQLRAMQALAHERNIDLSQPANAHLAAQLIPLMQSRMVQQSKENNTNMGAQSSSVPVSKQQATSPAVASEGSANANSSSDVPAHVGSVKARQTAPPSHLGLPINAGVAGNSNDMPVQQFSLHGRDTQGSLKQSVVGGNGMPSMHPQQNSANMNLGADSSLKVKASSSGSGPEPAKMQYARQLNQHASQAGGPTKEGGSGNYTKPQGAPSQMPQKLNGFTKHQLHVLKAQILAFRRLKKGDATLPQELLQAITPPPLDLQAQQPIHSAGGQNQDKSVGNTVAEQPRQNESNAKDSRPIISFDGNSSKQETFVRDQKSTGTEVHKQAILPVTKVSAGKEEQHSVGCSAKSDKEIEHGINRAPVRNELALDKGKAVASQDSVTDTVQINKPAQSSTVGQPKDTGPAQKYYGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVKELLYEEGTEVFHKRRTENLKKIEGLLAVNLERKRIKPDLVLKLQIEEKKLRLLDLQARLRDDINQQQQEIMAMPDRPYRKFVRLCERQRVELARQVQTSQKALREKQLKSIFQWRKKLLEVHWAIRDARTARNRGVAKYHEKMLKEFSKHKDDDRNRRMEALKNNDVDRYREMLLEQQTSLPGDAAERYNVLSTFLTQTEEYLQKLGSKITSAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAATCAGEEVMIRNRFMEMNAPNDGSSSVSKYYNLAHAVNEKVLRQPSMLRAGTLREYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGSKDHRSKLFSQEVMAMKFNVLVTTYEFIMYDRAKLSKIDWRYIIIDEAQRMKDRESVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEDPNQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCRMSAFQSAIYDWIKSTGTLRLNPEEEKCRMEKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEMRSGGTTDMEDELAGKDRYIGSIESLIRSNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERCQETVHDVPSLQEVNRMIARNDEEVELFDQMDEEEDWLEEMTRYDQVPDWIRASTREVNAAIAASSKRQSKKNALSGGDVGLESSEMGSERRRGRPKGKKNPSYKELEESDEEISEERNEDSAHDEGEIGEFEDDGYSGADGAQLVDKDKLEDVTLSDAEYECPRSSESARNNHVVEGGSSASSADGKRLIQTVSPSVSSQKFASLSALDAKPSSASKRMGDDLEEGEIAVSGESHMYHQQSGSWIHDRDEGEEDQVLQKPKIKRKRSLRVRPRHTMERPEDKSGSEMASLQRGVSSLLRDNKYPLQSRINPESKTFGDSSSNKHDKNESILKNKRNLPSRKVANASKLHVSPKSSRLNCTSSPSEDNGEHSRESWKGKSNNLRGSSAHSTKMSEIILRRCKNVISKIQRRLDKEGHQIVPLLADLWKRIDNSEFAGGSGNNLLDLRKIDQRIDRLEYTGVMELVFDVQFMLKSAMHFYGYSYEVRTEARKVHDLFFDILKIAFSDIDFGEAKSALSFTSQISASAAASSKQANAFPSKRKRGKNDMETDPIPTQKLLQRGSTSNGESGRIKVQLPQKVSKTGSGSGSAREQLQQDSPSMLTHPGDLVICKKKRNERGEKSSVKPRIGSAGPISPPSMVPAMRSPTSGSGSTPRAGHAHTSNGSGGSAGWANPVKRMRTDSGKRRPSHM* 2223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1596 1922 - -
Mal3g2729 2222 Gene3D - 1237 1447 IPR027417 -
Mal3g2729 2222 SMART bromo_6 1927 2038 IPR001487 GO:0005515
Mal3g2729 2222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1328 1505 IPR001650 -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 195 212 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 2088 2134 - -
Mal3g2729 2222 ProSiteProfiles QLQ domain profile. 476 512 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal3g2729 2222 Gene3D - 1925 2079 IPR036427 GO:0005515
Mal3g2729 2222 MobiDBLite consensus disorder prediction 522 571 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1776 1795 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 637 658 - -
Mal3g2729 2222 SMART ultradead3 993 1182 IPR014001 -
Mal3g2729 2222 Pfam QLQ 477 510 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1701 1745 - -
Mal3g2729 2222 Gene3D - 988 1236 IPR038718 -
Mal3g2729 2222 Pfam SNF2-related domain 1000 1304 IPR000330 GO:0005524|GO:0140658
Mal3g2729 2222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1227 IPR027417 -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 304 342 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 441 473 - -
Mal3g2729 2222 SMART helicmild6 1354 1438 IPR001650 -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 182 224 - -
Mal3g2729 2222 Coils Coil 746 766 - -
Mal3g2729 2222 Pfam Helicase conserved C-terminal domain 1328 1438 IPR001650 -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 518 580 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1678 1700 - -
Mal3g2729 2222 CDD SF2_C_SNF 1323 1448 - -
Mal3g2729 2222 SMART QLQ_2 475 512 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal3g2729 2222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1231 1568 IPR027417 -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1822 1851 - -
Mal3g2729 2222 PANTHER SNF2/RAD54 HELICASE FAMILY 35 2153 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1852 1869 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1749 1765 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 2062 2222 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 304 412 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 369 412 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 2140 2156 - -
Mal3g2729 2222 SUPERFAMILY Bromodomain 1977 2034 IPR036427 GO:0005515
Mal3g2729 2222 MobiDBLite consensus disorder prediction 2173 2201 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1882 1899 - -
Mal3g2729 2222 MobiDBLite consensus disorder prediction 1 58 - -
Mal3g2729 2222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1009 1174 IPR014001 -
Mal3g2729 2222 PANTHER ATP-DEPENDENT HELICASE BRM 35 2153 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Mal3g2729 2222 MobiDBLite consensus disorder prediction 637 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2729 Mal-Chr3 100721404 100732169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2729 1018 1463 RAD5 or RAD16-like Gene Family AT1G02670 25.145 1.55e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal3g2729 SNF2_N 7.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2729 - - gmx:100811608 3312.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2729 3 100721404 100732169 Mal3g2729 3 100721404 100732169 ECH
Mal3g2729 3 100721404 100732169 Mal5g1334 5 23418383 23428851 PCT