Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2684 ATGGATCACGGGGACCATATGGCGTTATCCAGTTCTGCATCTTACTATATGCAGCAAAGAGGACTACCTGGTTCTGGAGCACAACCCGAGTTGCATGTTTCGCAGAGTTTTAATCAACTGTCTAATCCCAATCTACAATTTCAATCCAGCATTGGTGGTGGTAGTAACATTGGAACCACACTACCGATAGAATCTTCGGCAATTTCATCTCAAGGTGTCAATGTGAGTGGTCACACCGGAGTGCCGTCGGGGGAGACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCGCTGATAGAGTTGTGTCATTGGCACTGAGTCCAAGTCCAACACCATCTAGTAATCCTGGAACCGTGGCGCAAGGCGGCCCGAAACGAGGGAGAGGGCGTCCGCCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTTGATGTCTGGTTCAGCTGGGACGGGATTCATTCCTCATGTTATCCACATTGCAAGTGGAGAAGACATTGCATCAAAAGTCTTGGCATTTTCTCAGGTGCGAGCCAGAGCTTTATGTGTTTTGTCAGCTACTGGCATTGTCTCAACCGTCATCCTTCGTGAGCCTTCACCTTCAGGTGGCACTCTCAAATACGAGGGACATTTTACGATAATGAGCATGTCAGGCTGTTACTTGCCTACTGAGGATGGCTCCTCACGGAACCGAGATGGTGGACTAAGTATTTCCCTTCTTGGTCCTGATGGCCGCCTCTTTGGTGGAGCAGTTGGTGGAATGCTTGTTGCTGCAAGTCCTGTCCAGGTGATGGTTGGGACCTTTCTGTGGGGTAGATTGAAGGCAAAGAACAAGAAAAAGGAAAGCTCAGAAGAAGCAGAAGGTGCTGTTGAATCAGATCATCAAGGAGCTCATAATCCAGCTGCACTGAATAGCATTTCACCGAATCAAAATATGACTCCAACCTCATCCTTAAGTCCTTGGTCAACAGCTTCACGTCAGATGGATATGGGTAACTCCCATGCTGACATTGATTTAATGCGTGGTTGA 1038 0.4807 MDHGDHMALSSSASYYMQQRGLPGSGAQPELHVSQSFNQLSNPNLQFQSSIGGGSNIGTTLPIESSAISSQGVNVSGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNPGTVAQGGPKRGRGRPPGSGKKQQLASFGELMSGSAGTGFIPHVIHIASGEDIASKVLAFSQVRARALCVLSATGIVSTVILREPSPSGGTLKYEGHFTIMSMSGCYLPTEDGSSRNRDGGLSISLLGPDGRLFGGAVGGMLVAASPVQVMVGTFLWGRLKAKNKKKESSEEAEGAVESDHQGAHNPAALNSISPNQNMTPTSSLSPWSTASRQMDMGNSHADIDLMRG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2684 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 320 IPR039605 GO:0003680
Mal3g2684 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 279 - -
Mal3g2684 345 Gene3D - 158 291 - -
Mal3g2684 345 MobiDBLite consensus disorder prediction 107 121 - -
Mal3g2684 345 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Mal3g2684 345 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Mal3g2684 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Mal3g2684 345 MobiDBLite consensus disorder prediction 301 333 - -
Mal3g2684 345 ProSiteProfiles PPC domain profile profile. 153 294 IPR005175 -
Mal3g2684 345 MobiDBLite consensus disorder prediction 283 345 - -
Mal3g2684 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 320 - -
Mal3g2684 345 MobiDBLite consensus disorder prediction 70 141 - -
Mal3g2684 345 CDD DUF296 158 271 IPR005175 -
Mal3g2684 345 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Mal3g2684 345 PRINTS AT-hook-like domain signature 124 135 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2684 Mal-Chr3 99878394 99883180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2684 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 47.107 7.80e-82 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2684 - - gmx:100814615 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2684 3 99878394 99883180 Mal3g2684 3 99878394 99883180 ECH
Mal3g2684 3 99878394 99883180 Mal5g1385 5 24753042 24758030 PCT