Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2672 ATGAACAACAATAGAGGGAGATATCCACCTGGGATTGGGTTAGGACGAGGTGGTGGTGGTGGCTTGAACTCGAACTCGAACAACTCGAACGCCGGGTATCAACAGAGGCCACATCATCAACAACAACAGTATGTGCAGAGGCACATGATGCAAAGTCAGAGTCAGCATCAGCAACACTATCAGCATCATCAACAGAATCAACAGTATCAGCAACAGAATCAGCAGCAGCAACAACAACAATGGCTGAGAAGGAACCAGTTGGGTGGTAGTACTGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAACAAATGATCCTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCAGCAGCTGATACACGCTATAGGACAGAGGATGTGACAGCAACCAAGGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATACGAGAAGGGGTTTGAAAGGCCGTCCCCTATCCAAGAAGAAAGCATTCCGATTGCCCTTACTGGTAGTGACATTCTAGCTAGGGCTAAAAATGGAACTGGCAAAACTGCTGCATTTAGCATTCCTGCATTGGAAAAAATTGATCAAGATAATAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACTAGCCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCTAGAGTTCCAGCCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTCACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAACCGTTTATCATTAACCTTATGGATGAACTTACCCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAATCTATCATCTTCTGCAATTCGGTGAATCGAGTTGAACTACTTGCTAAGAAAATCACAGAACTAGGGTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTTTTCCATGATTTCCGCAATGGTGCATGCAGGAATCTCGTTTGTACTGATCTTTTCACTCGAGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGATCCGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGCTTCAATCTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCATTCATTGACCAGGCTATATACTGTCGGTGA 1542 0.4157 MNNNRGRYPPGIGLGRGGGGGLNSNSNNSNAGYQQRPHHQQQQYVQRHMMQSQSQHQQHYQHHQQNQQYQQQNQQQQQQQWLRRNQLGGSTDTNVVEEVEKTVQSETNDPSSQDWKARLKIPAADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSLEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKPFIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2672 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Mal3g2672 513 Gene3D - 97 343 IPR027417 -
Mal3g2672 513 SMART ultradead3 158 354 IPR014001 -
Mal3g2672 513 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 513 - -
Mal3g2672 513 MobiDBLite consensus disorder prediction 20 81 - -
Mal3g2672 513 Pfam Helicase conserved C-terminal domain 365 471 IPR001650 -
Mal3g2672 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Mal3g2672 513 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 4 513 - -
Mal3g2672 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 510 IPR001650 -
Mal3g2672 513 CDD SF2_C_DEAD 351 480 - -
Mal3g2672 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 340 IPR014001 -
Mal3g2672 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 493 IPR027417 -
Mal3g2672 513 SMART helicmild6 390 471 IPR001650 -
Mal3g2672 513 MobiDBLite consensus disorder prediction 1 81 - -
Mal3g2672 513 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Mal3g2672 513 CDD DEADc_DDX6 141 341 - -
Mal3g2672 513 Gene3D - 344 512 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2672 Mal-Chr3 99762146 99767778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2672 141 503 Eukaryotic Initiation Factors Gene Family AT3G19760 38.904 2.81e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2672 K12614 - fve:101307921 829.706