Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2669 ATGGGAAGGACACCATGTTTTGATAAGAAGGATTTGAAGAAAGGACCTTGGACTTCTGAAGAGGATGAAATTCTTGCTAACTATATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGACCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCTATCCTTGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCCGGAAGAACAGACAATGAGATAAAGAATTTTTGGAACACGCATTTGAAGAAACGTCTCAAAACCATGGGAATTGATCCAAAAACACATGAGCCAGTAGCCTCATCAACTAGTTACCCAAATCACAAGTCACATGCATCGGTTTCAACACGTCACATGGCTCAATGGGAGAGTGCAAGACTTGAAGCAGAAGCAAGACTCTCAATTGAGTCACACTTCAACAGCCACAACAACAATCCTAATTCCTTTGCAAAAACAGATTCTTCTTCTGATTACTTTCTCCAAATATGGAACTCTGAAGTTGGTGATGCATTTCGCAAGGTTCAAAAACCGGATACAGATCATAATAACAAAATTATTAGTTGCTGTCAGAGTCCTATTTCTGCAGGATCATTATCTTCCAACAAATGTGACTCAGTTTCTGCTGTTACAGCAAGCAATAGTACTGTGAAAGAAGAGTTGGAGTGGAGGAACTACAAGTCTTTTGCTGAAGATGTGATTCTTGAATCTGATTCATCAAGCTCTAATGACTTGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTTGATTTTCCTATGAACAATGACATGAGCTTCTTAGGAAACTCTTTTGCTTGTCCCTTTTAG 921 0.405 MGRTPCFDKKDLKKGPWTSEEDEILANYIKKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKTMGIDPKTHEPVASSTSYPNHKSHASVSTRHMAQWESARLEAEARLSIESHFNSHNNNPNSFAKTDSSSDYFLQIWNSEVGDAFRKVQKPDTDHNNKIISCCQSPISAGSLSSNKCDSVSAVTASNSTVKEELEWRNYKSFAEDVILESDSSSSNDLEDSSDTALQLLFDFPMNNDMSFLGNSFACPF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2669 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mal3g2669 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mal3g2669 306 MobiDBLite consensus disorder prediction 123 143 - -
Mal3g2669 306 SMART sant 13 64 IPR001005 -
Mal3g2669 306 SMART sant 67 115 IPR001005 -
Mal3g2669 306 CDD SANT 16 62 IPR001005 -
Mal3g2669 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal3g2669 306 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mal3g2669 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Mal3g2669 306 Gene3D - 11 68 - -
Mal3g2669 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mal3g2669 306 MobiDBLite consensus disorder prediction 128 143 - -
Mal3g2669 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal3g2669 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal3g2669 306 CDD SANT 70 113 IPR001005 -
Mal3g2669 306 Gene3D - 70 144 - -
Mal3g2669 306 PANTHER PROTEIN ODORANT1-LIKE 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2669 Mal-Chr3 99747971 99751440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2669 1 298 MYB Transcription Factor Family AT3G61250 58.804 7.11e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g2669 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2669 K09422 - gmx:100816569 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2669 3 99747971 99751440 Mal3g2669 3 99747971 99751440 ECH
Mal3g2669 3 99747971 99751440 Mal5g1397 5 24997039 25000027 PCT