Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2667 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAGTTGCTTCAAATGCAGTCACTGTAAGGGACATCTTACGATGAGTACTTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCCCATTTTGAACAACTTTTCAAGGAATCCGGAAATTTCAGCAAGAACTTTCAAGCAAAGTCTACTGAGAAACAAAATGAGTTGATGAACAGAACACCCAGTAGACTCTCCTCCATGTTCAGTGGAACTCTTGACAAATGTTCAGTTTGCACAAAGACAGTCTATCCTTTGGAAAAGATGACATTGGAAGGGGAATGTTATCACAAGACTTGCTTTAGGTGTGCTCATGGAGGTTGCCACCTTACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTTTATTGCAAGCACCATTTTCAACAACTTTTCATGGAGAAAGGAAACTACAATCATGTACTTCAAGCTGCTGCAAACAAAAAGAATGCCACTCCACCACCTGAACCAGCTGATGATGAACCATCAAAACCAGAAGAAGAAATTGATGAACAGATTGAAGAAAAGTCTGAAACACATGAAACTTGA 639 0.3975 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCFKCSHCKGHLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQAKSTEKQNELMNRTPSRLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECYHKTCFRCAHGGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKKNATPPPEPADDEPSKPEEEIDEQIEEKSETHET* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2667 212 SMART lim_4 105 157 IPR001781 -
Mal3g2667 212 SMART lim_4 9 61 IPR001781 -
Mal3g2667 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 172 - -
Mal3g2667 212 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Mal3g2667 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mal3g2667 212 Pfam LIM domain 10 65 IPR001781 -
Mal3g2667 212 Pfam LIM domain 106 161 IPR001781 -
Mal3g2667 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mal3g2667 212 Gene3D Cysteine Rich Protein 5 72 - -
Mal3g2667 212 MobiDBLite consensus disorder prediction 174 212 - -
Mal3g2667 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Mal3g2667 212 Gene3D Cysteine Rich Protein 102 170 - -
Mal3g2667 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mal3g2667 212 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Mal3g2667 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mal3g2667 212 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2667 Mal-Chr3 99739398 99741900 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mal3g2667 LIM 1.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2667 - K09377 gmx:100779513 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2667 3 99739398 99741900 Mal3g2667 3 99739398 99741900 ECH
Mal3g2667 3 99739398 99741900 Mal5g1406 5 25080926 25082838 PCT