Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2625 ATGAGTTTTGGTGACAATAAACCAAGTTGTGGTGAAAGTGCTAAAATCATGCCTTCTAGTGCAATCTCACAACCTCATCTATCAACTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGGTCTATCATTAGCACTTCAAACAAATAATGGTTTGAGAAGGAATAGAGAAGAAGAAGAACATGAAAGTTGCAGATCTGGTAGTGATAATTTTGATGGTATTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGAAAAAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCACCCTGATGAAAAACAAAGGCTTGTACTTAGCGAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAACGCCATGAGAATTCACTACTTAGGCAAGCAAATGATAAGCTAAGAGCTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCAATATGTTCAAATTGTGGAGGACAAGCTATTATTAATGAAATTTCACTTGAAGAACAACATTTAAGAATTGAGAATGCAAGATTAAAAGAAGAGTTAGATAGAGTTTGTACACTTGCCGGAAAGTTTTTAGATCGTCCGATTACCTCGTTACCAAACTCATCAAGTTCCGAAATCGGTTTTGTTGGTTTGAACAATATTAATACATTGCCTTCAACATTACCTTTAGGACAAGATCATTTTGGCATGGTGTCAATTTCACCACCTTCAATTACAAGAGGAACAAATATGGTAACAAATAATAATAGTAATGGTTTTGATAGATCAATGGAAAGGTCTATGTTTCTTGAACTTGCTTTGGTTGCAATGGATGAGTTAGTGAAGATGGCACAAACTAATGAACCTCTTTGGATTAGAAATGTTGAAGGTGGAAAAGAAATTTTTAATCATGAGGAATATACAAGGATTATCACTCCTTGTATTGGTTTGAAACCAAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCTAATCGATGGTCAGAAATGTTCCCTTGTGTGATTGCAAGAAGCTCCACAACTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCTCTACAACTGATGCAAGCTGAACTTCAAGTACTTTCTCCATTGGTTCCTGTTCGTGAGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCCATAGATACCATTAGAGAAACTTCATCTGGTGCACCCACTTTTCTTAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTCCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGAAGAAAGCCAAGTTCACCAGCTCTATAGGCCCTTACTAAGCTTAGGCATGGGTTTTGGCGCACAACGTTGGGTTGCGACCCTCCAACGCCAATGCGAATGTCTAGCCATCTTAATGTCATCATCACTCCCCTCCAGAGAACAATCAGCAATAAACTCCGGTGGAAGGCGTAGCATGCTAAAGCTAGCGCAACGGATGACAAAAAACTTTTGTGCGGGAGTTTGTGCATCGACGGTGCACAAATGGAACAAGTTAAATGCAGGGAACATGGGCGAGGACGTTAGGGTAATGACAAGGAAGAGCATGGATGATCCTGGTGAGCCATCAGGGATTGTGCTCAGTGCTGCAACCTCTGTTTGGCTACCCATTTCACCGCAAAGAGTCTTTGATTTCCTTCGGAACGAGAGGCTTAGAAGTGAATGGGACATACTCTCCAACGGTGGTCCAATGCAAGAAATGGCTAGCATTGCCAAAGGACATGACCATGGCAATTGTGTCTCCCTCCTCCGAGCTAGTGCTATTAATTCAAGCCAAAGTAGCATGTTGATACTACAAGAGACATGCACAGATGCCTCGGGATCACTTGTTGTGTACGCGCCGGTAGATATTCCAGCAATGCATGTAGTAATGAACGGCGGCGACTCAGCTTACGTTGCGCTTCTTCCGTCGGGTTTTGCCGTGTTACCAGATGGACATATCAACAATAGTGGTAATCATGATGGCGCATCGCAGGAGAGAACGAGTGGTTCGCTTTTGACGGTGGCTTTTCAGATACTTGTGAATAGCCTTCCCACGGCAAAGCTCACGGTGGAATCAGTGGAAACGGTGAACAATCTCATTTCATGCACGGTACAAAAGATAAAAGTTGCACTTCAATGTGAGAGTTGA 2334 0.4152 MSFGDNKPSCGESAKIMPSSAISQPHLSTPTLVKSMFNSPGLSLALQTNNGLRRNREEEEHESCRSGSDNFDGISGDDFDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLVLSERLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRAENMSIREAMRNPICSNCGGQAIINEISLEEQHLRIENARLKEELDRVCTLAGKFLDRPITSLPNSSSSEIGFVGLNNINTLPSTLPLGQDHFGMVSISPPSITRGTNMVTNNNSNGFDRSMERSMFLELALVAMDELVKMAQTNEPLWIRNVEGGKEIFNHEEYTRIITPCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARSSTTEVISSGINGTRNGALQLMQAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSSLPSREQSAINSGGRRSMLKLAQRMTKNFCAGVCASTVHKWNKLNAGNMGEDVRVMTRKSMDDPGEPSGIVLSAATSVWLPISPQRVFDFLRNERLRSEWDILSNGGPMQEMASIAKGHDHGNCVSLLRASAINSSQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVLPDGHINNSGNHDGASQERTSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKVALQCES* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2625 777 SUPERFAMILY Bet v1-like 283 516 - -
Mal3g2625 777 CDD homeodomain 87 145 IPR001356 GO:0003677
Mal3g2625 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 47 774 - -
Mal3g2625 777 Coils Coil 154 174 - -
Mal3g2625 777 Coils Coil 186 206 - -
Mal3g2625 777 SUPERFAMILY Homeodomain-like 73 145 IPR009057 -
Mal3g2625 777 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Mal3g2625 777 SUPERFAMILY Bet v1-like 544 768 - -
Mal3g2625 777 Gene3D - 76 161 - -
Mal3g2625 777 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Mal3g2625 777 MobiDBLite consensus disorder prediction 1 24 - -
Mal3g2625 777 MobiDBLite consensus disorder prediction 52 67 - -
Mal3g2625 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 774 IPR042160 -
Mal3g2625 777 CDD START_ArGLABRA2_like 286 515 - -
Mal3g2625 777 Pfam START domain 292 516 IPR002913 GO:0008289
Mal3g2625 777 SMART HOX_1 86 149 IPR001356 GO:0003677
Mal3g2625 777 SMART START_1 291 516 IPR002913 GO:0008289
Mal3g2625 777 Coils Coil 42 62 - -
Mal3g2625 777 ProSiteProfiles START domain profile. 282 519 IPR002913 GO:0008289
Mal3g2625 777 MobiDBLite consensus disorder prediction 51 95 - -
Mal3g2625 777 Pfam Homeodomain 88 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2625 Mal-Chr3 99073881 99080857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2625 17 777 Homeobox Transcription Factor Family AT3G61150 64.773 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal3g2625 START 5.5e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2625 K09338 - gmx:100783614 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2625 3 99073881 99080857 Mal3g2625 3 99073881 99080857 ECH
Mal5g1488 5 28469450 28475631 Mal3g2625 3 99073881 99080857 ECH