Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2587 ATGAGTTTCCTGCAGGGAATCATTGATTCCTTTAACTCCGTCTTCTCTCCTCAAACCATCGATCACAATTCTTCTCAAACCAATCTCAGTGCTTCTTCTTCATCAATGGAAGCTTCTCCTTCTTCGGTTTCAAACGAACGTGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACACAGGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGAGTGATCGATGTCGCTATTCTTCACTATAGGAATGCTCATAGGATCCTTCTCGAAGCTAATTCTACTCCTGTTCCTTCCTTCATCACTCCCAGTGAGAAACAGAAGGTACAATCATATCGTCAAAAGATAACAAAATGGCAGGGACAAGTTTCTGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCATCTGCTAACCAGAGCACCTCAAACCGTTCGCAAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGTTCCAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAGCCCAAAACCTAGTCAAACATCTGGTGAAAATTATGACACGAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTTCAATGGGATGATGTTGGTGGCCTGGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACAAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGACCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTGGGTGAAGCTGAAAAACTTGTACGGACACTATTCATGGTAGCTGTATCGAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAATTGGATGATGCAGTTCTTAGAAGACTGGTTAAGAGAATATATGTACCTTTACCAAATGAAAATGTTAGGAAACTTCTTCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAAACCGAAGGATACTCTGGAAGTGATCTGCAAGCATTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAACTGGGTTCGAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGATTGAGGTATGAGGATTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAGATGGAATGAGGAATTTGGCTCAAATTGA 1452 0.4105 MSFLQGIIDSFNSVFSPQTIDHNSSQTNLSASSSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGVIDVAILHYRNAHRILLEANSTPVPSFITPSEKQKVQSYRQKITKWQGQVSERLQALNRRAGSSSANQSTSNRSQTAAVPTKLSNTTKKVFQKNPQRKDEVNKVQSPKPSQTSGENYDTKLVEMINTAIVDRSPSVQWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVAVSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELERWNEEFGSN* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2587 483 SMART AAA_5 244 380 IPR003593 -
Mal3g2587 483 PANTHER BNAC04G50250D PROTEIN 4 483 - -
Mal3g2587 483 Gene3D - 379 461 - -
Mal3g2587 483 MobiDBLite consensus disorder prediction 132 191 - -
Mal3g2587 483 Gene3D - 207 477 IPR027417 -
Mal3g2587 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 480 IPR027417 -
Mal3g2587 483 PANTHER AAA DOMAIN-CONTAINING 4 483 - -
Mal3g2587 483 Pfam AAA+ lid domain 403 434 IPR041569 -
Mal3g2587 483 Gene3D - 44 134 - -
Mal3g2587 483 MobiDBLite consensus disorder prediction 132 164 - -
Mal3g2587 483 SMART smart 52 129 IPR007330 -
Mal3g2587 483 ProSitePatterns AAA-protein family signature. 350 369 IPR003960 GO:0005524|GO:0016887
Mal3g2587 483 CDD MIT_spastin 52 130 - -
Mal3g2587 483 Pfam ATPase family associated with various cellular activities (AAA) 248 378 IPR003959 GO:0005524|GO:0016887
Mal3g2587 483 CDD AAA 233 378 - -
Mal3g2587 483 Pfam Vps4 C terminal oligomerisation domain 449 481 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2587 Mal-Chr3 98352112 98357346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2587 188 433 Calmodulin-binding Proteins AT3G56690 41.569 4.82e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2587 K13254 - gmx:100786789 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2587 3 98352112 98357346 Mal3g2587 3 98352112 98357346 ECH