Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2533 ATGGCTGCAAATTCTGATGATATCTTGTCCTTGTCATTACGGTCTACTTCAGAGGTTCGTGGGGGTGCTGATTCTCCCGGGGCTGCAGTGTGTTCTCTTTGCCACAAGGCCTTATCGCCTGATGATGAGATAACAGGTGATCTTGCAACCGGTGGTGTATGTGGTGATTGTAAATTTTTATTGCTTGAAGACTTTGGGAATCATACACTTACACAAAGCTCTCGAAGGAGGCATAGAGGAAGATTGAGGCACGGTAGTTCTGAATCAGTTGAGAACCCTACATCTGTAGAGGAAGATCAACTTGTACATGGTGACAACCCTGCATGGTCATTGCAGTATGCTAGTGCAAATACAACTCCTAGTGGGTCTAGAAGCTGGAGGCAAGTTCTGTCAGATACTGATAGTGATGGTTTTGATAATTGGTGTTCTCTTTATGGTGAAAATGAATCAAGTTCGAGTTTTAGACCGTATAGGGTTCCCCACAGTGAGACTGATTCCTTTTCTTTCAGTGTTTATGGAGGCGAGTCAGATATCTCCATGGATAGACAGAGTTTTGTAGGCAATGAAACTTTTAATTTACCAGATGAGGGAGATGAGTTTGACAGTGACACCGACATCGATCCAATGCATGCTGGCCTCGGTCAGTGGAACTCGGATGATACGGAAGATGATGAGGAAGAGGAACTACCTGAGGTTGACGAAGCTGAAGCCTCTCACATTCAAATTCTTTTGAACACAAGTCCAAGTGAGAACCGAAGTCGCATTAATTGGGAACAAAGGTTTAATGCTACTGAATCTGAGGGAATATTTAGCCGAATAATCAGGGAAACTTGGTTAGCTTTGGATGACGCTGATTTACCTAATGGAGCTAACTTTGGAGATTTCCTCGATACCAGACACTTCAATGATCTGCTTGATCATCTCGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCGTTTGTAAATAATCTACCTCGCGTAGTCATTAGCAAGGAACACGAGAAGCATGACGAACTAGTTTGTGCCATCTGCAAGGATGTTTTGGCCCTCGGCACTGAAGTAAATCAGCTCTCTTGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTACGAGCTTCCAACCGATGATAAGGATTATGAAGAGGGAAAACAGAACGTTGATGGGAGAAATGTGATCTATGATAGGCAACAACTACATGTTATGGATGATAGTTTCTCAGATGTTTCTGATGGAGCCGAAGCGGTTGAAGACGATGGTACCACTCCACATGATACCGTGAATTCTTCTGCAATAAGTGGTGGTAGCGGAAGATGGATGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGCATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAGATTGAAGGGACTAGACATTCGAGTGCTCGCTATTTGTCTGCGCAAAATCAGCACACTGTTCATGTTTATAGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1566 0.4387 MAANSDDILSLSLRSTSEVRGGADSPGAAVCSLCHKALSPDDEITGDLATGGVCGDCKFLLLEDFGNHTLTQSSRRRHRGRLRHGSSESVENPTSVEEDQLVHGDNPAWSLQYASANTTPSGSRSWRQVLSDTDSDGFDNWCSLYGENESSSSFRPYRVPHSETDSFSFSVYGGESDISMDRQSFVGNETFNLPDEGDEFDSDTDIDPMHAGLGQWNSDDTEDDEEEELPEVDEAEASHIQILLNTSPSENRSRINWEQRFNATESEGIFSRIIRETWLALDDADLPNGANFGDFLDTRHFNDLLDHLAENDSSRRGAPPAAASFVNNLPRVVISKEHEKHDELVCAICKDVLALGTEVNQLSCSHLYHSHCILPWLKTRNSCPLCRYELPTDDKDYEEGKQNVDGRNVIYDRQQLHVMDDSFSDVSDGAEAVEDDGTTPHDTVNSSAISGGSGRWMFLAAAPIVSLVGMVIVLWLGRNSQIEGTRHSSARYLSAQNQHTVHVYSSQNQRESRSRRWWCPF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2533 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 287 435 - -
Mal3g2533 521 Pfam Ring finger domain 346 387 IPR001841 -
Mal3g2533 521 SMART ring_2 346 386 IPR001841 -
Mal3g2533 521 MobiDBLite consensus disorder prediction 194 235 - -
Mal3g2533 521 MobiDBLite consensus disorder prediction 72 99 - -
Mal3g2533 521 SUPERFAMILY RING/U-box 326 393 - -
Mal3g2533 521 MobiDBLite consensus disorder prediction 218 233 - -
Mal3g2533 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 393 IPR013083 -
Mal3g2533 521 ProSiteProfiles Zinc finger RING-type profile. 346 387 IPR001841 -
Mal3g2533 521 PANTHER OS06G0101300 PROTEIN 287 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2533 Mal-Chr3 97310829 97312394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2533 23 521 C3H Transcription Factor Family AT5G01980 43.100 6.14e-108 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2533 - - mtr:MTR_7g074170 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2533 3 97310829 97312394 Mal3g2533 3 97310829 97312394 ECH