Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2436 ATGGCAGATCCTGCTAGTAATGGAGGCCTTGATCGAGATATTGAACAAGCACTCATTGTTTTAAAGAAAGGAAGTCAGTTAATAAAGTACAGCCGAAAAGCGAAGCCAAAAGTTTGCCCTTTCAGACTTTCATTGGATGAAACAACACTGATTTGGATTTCTCATAAAAAGGAAAGGACCCTAAAACTATCATCGGTTTCACGCATTATTCCTGGACAAAGAACTGTTGTTTTTCGAAGATATCTGCAACCAGAAAAAGATTATCTTTCATTTTCACTTGTTTATAATAACGGAGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGGCTTAAGGCATTGATATCAACTGGAAGGCATAACAGGCTTACTGGAAGTGAATTATCATATGATGGTGTTGATTTTATTCCGAATGGCCGCCCTTTTGGTGCAGCATTAGAGATTAGCTCAAGCATCGTTCGTGGTTGGGTCTCTACTGATTCAGCTCCTCGTGAGTCTTCAATCTGTTCGGCGAACTCAGATGTTGGGTTAGATCGTACAAATATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGGATTAGTGTGTCGAGTGCAACACCTAGCAATTCAAGTACAGGATCAGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGCGGTTTCACCTGATGGAAGTGGCACTCAGTTCCCTTCCACCACCGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTCGTTCTTGATGTTCAACAGATTGCGTCCGGTGTGCGTCATATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGACTTGGTCATGCAATCGATAAAGATTTTGGACGACCTCAACTTGTTGAGTTTCTAGCAGTTACTAATGTAGAGAGTGTTGCGTGCGGAGAAAATCATACATGTGCTGTATCTATATCGGATGAACTATTCTCATGGGGTGACGGCACATATAACGTTGGACTTCTCGGACATGGCACCGATGTTAGCCATTGGATACCAAAAAGGATTAGTGGTCCTTTGGAAGGACTTCAAGTTATATCGATCGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTATTAGGTCATGGTAGTAGAGAAAGTGTGTCATATCCAAAAGAGGTACAATTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCGTCGCGAAAGCTCTTCACTTGGGGAGACGGCGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTCTCGACACTCATTGAATATAATTTCCACCAGATTGCATGTGGACACACTATGACTATTGCTCTCACTACTTCTGGACATGTATTTACTATGGGAGGCACGGAAAATGGTCAACTAGGAAATTCTTTATCTGATGGAAAAATACCTATACTGGTACAAGACTCATTGGTGGGTGAGTTTGTTGAGGAAATATCATGTGGATCTCATCATGTTGCTGCTTTGACATCAAGGAGTGAATTATATACTTGGGGTAAAGGTGCAAATGGAAGATTGGGACAGGGAGATATAGATGATAGAAAATCACCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTGAAAAACATTTCTTGTGGCTCAAGTTTCACTTCTTGCATATGCATTCATAAGTGGGTATCTGGAGTAGACCAGTCCGCTTGCACCGGTTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGCGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAAGTTTTGAAAGCAGCATTGGCTCCGACACCAGGAAAGCCTCACCGCGTATGTGATTCTTGCTATACTAAGCTTAAAGCCATTGAGGCAAATGCGGCTTCGAATCTTAATAGAAAAGCTACTACTACACAACCTCGCAGTTCTATTGATGGAAGGGATAGATTTGGCCAAGGAGAAATAATAAGGTCTACAAAAATTCTTTTTCCTCCTTCCTCAGAACCACTAAAATATCTTGAGATGAGGACTAATAAACTTGTAAATTCGTCCATGCTACCAACTGCGCAAATTCCATCAATTACACAAATGAAAGACATATCATTTTCAACTTCAGCAAGTTCCATTCAAAATGGCTTGAAGCCTAATTTATCTCCAACTCCACCAGCAACTCCACCTCTCAATTCGAGATCAGTATCCCCGTATGCGAGAAGGCCAAGTCCACCTCGTTCTAACAGTCCGAGATTTTCAAGAAGTCTTATTGATAGTTTGAAGAAGACAAATGAGCTTTTGAACCAACAAGTCTCAAAATTGCAGAACCAAAATCGAAATATGAAGCAAAAAAGTAACATGGAAATTCAGAAACTACAGAAAAACATTGAGGATGCCACCTCTTTGGCTGCAGAAGAATCTTTTAGACATAGAGCAACCAAAGAATATTTTGGGTCCATGATAGTTCAGTTGAAGGAAATGGCTGAGAAATTACCACCAGAAGTTTTAGAGAGTGAAAAATTTAGAAACATGGTTAATCAGGCTGAGAATTTTCTAGATGAAAATCCAAAATCTGAAACATGTTATGGACCATCAAACTTGGAATCTGAGCAACAAAACGAACCTATTTCAAATAATGGCTCGGATAAATTGCAAGAAAACAGAATAGAAGAAAATAATAACGAATCTGCAGAAGTTAATCCATCACAAGATGTAGGAAATGTCTTTCAAGAAAGCAATGAATCATCTTCATCTAATACTGAAGCAACAGTGACTTCACAAAGCTCTGAAAATGATTTAAGATCATTGAACCCTTCAAGATCAGTGAGAGAAGGAGAAACACAAACCGTCGATCAATTTGAACCTGGCGTTTATGTGACACTAATAGTAAAGCCTGGTGGTAGAAGAGTTTTCAAACGTGTTAGATTCAGTAAACGAAGGTTTCGTGAACATCAAGCAGAAGAATGGTGGAACTTAAACAAAGAAAGGGTGCTTGCGAGATATGGTCCACAAGCGACAAATCCTGGAAATGTAGCGTCGTCTAGCCTTACGCCACCACCTGCAAATCCTGAAGATGTAGCGTCGACTAGCAGTACTCCGCCAGCTGCTGAAGACAACATTGATGCAGCACCTTCCTAA 3291 0.4041 MADPASNGGLDRDIEQALIVLKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISHKKERTLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRHNRLTGSELSYDGVDFIPNGRPFGAALEISSSIVRGWVSTDSAPRESSICSANSDVGLDRTNMQGRTSIGDGFRISVSSATPSNSSTGSGPDDIESLGDVYIWGEVWADAVSPDGSGTQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHAIDKDFGRPQLVEFLAVTNVESVACGENHTCAVSISDELFSWGDGTYNVGLLGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGSRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHVFTMGGTENGQLGNSLSDGKIPILVQDSLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGQGDIDDRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYTKLKAIEANAASNLNRKATTTQPRSSIDGRDRFGQGEIIRSTKILFPPSSEPLKYLEMRTNKLVNSSMLPTAQIPSITQMKDISFSTSASSIQNGLKPNLSPTPPATPPLNSRSVSPYARRPSPPRSNSPRFSRSLIDSLKKTNELLNQQVSKLQNQNRNMKQKSNMEIQKLQKNIEDATSLAAEESFRHRATKEYFGSMIVQLKEMAEKLPPEVLESEKFRNMVNQAENFLDENPKSETCYGPSNLESEQQNEPISNNGSDKLQENRIEENNNESAEVNPSQDVGNVFQESNESSSSNTEATVTSQSSENDLRSLNPSRSVREGETQTVDQFEPGVYVTLIVKPGGRRVFKRVRFSKRRFREHQAEEWWNLNKERVLARYGPQATNPGNVASSSLTPPPANPEDVASTSSTPPAAEDNIDAAPS* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Mal3g2436 1096 Gene3D - 203 448 IPR009091 -
Mal3g2436 1096 SUPERFAMILY PH domain-like 13 123 - -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 455 501 IPR000408 -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 336 386 IPR000408 -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Mal3g2436 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Mal3g2436 1096 SUPERFAMILY FYVE/PHD zinc finger 609 678 IPR011011 -
Mal3g2436 1096 SMART fyve_4 607 676 IPR000306 GO:0046872
Mal3g2436 1096 Pfam Transcription factor BRX N-terminal domain 856 892 IPR027988 -
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 945 999 - -
Mal3g2436 1096 CDD PH_PLC_plant-like 12 124 - -
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Mal3g2436 1096 SUPERFAMILY RCC1/BLIP-II 224 610 IPR009091 -
Mal3g2436 1096 Gene3D - 449 614 IPR009091 -
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Mal3g2436 1096 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1052 IPR013591 -
Mal3g2436 1096 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Mal3g2436 1096 MobiDBLite consensus disorder prediction 1053 1096 - -
Mal3g2436 1096 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 686 IPR013083 -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 759 804 - -
Mal3g2436 1096 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Mal3g2436 1096 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Mal3g2436 1096 CDD FYVE_like_SF 618 671 - -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 901 999 - -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 783 804 - -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 1057 1087 - -
Mal3g2436 1096 Gene3D - 12 130 IPR011993 -
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Mal3g2436 1096 Coils Coil 808 853 - -
Mal3g2436 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Mal3g2436 1096 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1060 - -
Mal3g2436 1096 MobiDBLite consensus disorder prediction 901 934 - -
Mal3g2436 1096 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Mal3g2436 1096 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Mal3g2436 1096 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Mal3g2436 1096 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2436 Mal-Chr3 95589754 95594768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2436 995 1058 Major Intrinsic Protein MIP AT1G31880 35.938 2.22e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2436 - - gmx:100779684 1563.13