Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2254 ATGGGGTTTGTTCTCAAAAGAAAGAAGAAGGAATTAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAATAGAGATCATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGATATCCATTTTGCCAATACACTAGCTTCTGATTACCCAAGTGACCAGGATGGTGCCTACCTTCAAATGAGATTATCCTACAGCCCAGCTGCACACTTCTTCCTTTTTTTGGTTCAGTGGACTGACTGTCACCTTGCCGGAGCCTTAGGATTGCTTAAAATTTTTATATACAAGGCATATAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCAAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCATCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTATGTGCTACTAAGTACAAGCCTATAAAATTAGTAGACAAAGGAAAGAGCTCTGAAATTGACATAGAGAGAGAAGAAGAAGAAGAGTGTGATATTTGCATGGAGATTACCAGCATTGTTGTATTGCCCAATTGCAATCATTCAATGTGTATCAAATGTTACCGAGACTGGCATGCAAGATCGGAATCCTGCCCTTTCTGTCGGGACAGTCTTAAAAGAGTAAACTCAGGTGATCTTTGGATGTACATGAGCAGCAGTGAGATAGATGATCTTGCTTCAATCAACAAGGAGAATTTGAAAAGATTATTTATGTACATAGAAAAGTTGCCTCTTGTTGCTAGACCCTATATTCACATGATATCATCACAACTTGTGGTTGCCTCTTAG 819 0.3834 MGFVLKRKKKELEEEEEEEEKEKIEIMRKSFKDSLKALEADIHFANTLASDYPSDQDGAYLQMRLSYSPAAHFFLFLVQWTDCHLAGALGLLKIFIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATKYKPIKLVDKGKSSEIDIEREEEEECDICMEITSIVVLPNCNHSMCIKCYRDWHARSESCPFCRDSLKRVNSGDLWMYMSSSEIDDLASINKENLKRLFMYIEKLPLVARPYIHMISSQLVVAS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2254 272 SUPERFAMILY RING/U-box 165 217 - -
Mal3g2254 272 Coils Coil 2 41 - -
Mal3g2254 272 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Mal3g2254 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 220 IPR013083 -
Mal3g2254 272 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Mal3g2254 272 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 25 271 - -
Mal3g2254 272 SMART ring_2 174 211 IPR001841 -
Mal3g2254 272 PANTHER RING FINGER PROTEIN 41, 151 25 271 - -
Mal3g2254 272 Pfam Zinc finger, C3HC4 type (RING finger) 170 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2254 Mal-Chr3 91121753 91125406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2254 116 216 C3H Transcription Factor Family AT5G01960 30.769 9.67e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2254 K25840 - gmx:100814293 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2254 3 91121753 91125406 Mal3g2254 3 91121753 91125406 ECH