Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2228 ATGGCTAATCTTATTAAGTTTTCTCCTATTTCTGAAATCTCCAGTCAAAAAACATTTTGGAACCTTAAGGGCAAAGTCATTCGTTTGTGGCGTGTATCAGATTTTAACAAAAGCACTCTGCCATTTTCAATTGAAATGGTTTTACTTGATGACGCTGGTAACAAGATTCACGTCTCAATTAAGAAAACTTTACTTTACAAATTCAAAAACGAGATTTTTGAAGGAAAATGTTACAGCTTTGAAAACCTTGGTGTAGCTATTAATGGTGGGAGCTACAGAACTACAAGACACAGTTACAAACTGAATTTTCAGTTTACTACCAAGGTTCAATATCTCCCAAATCTGAAAATCATTAGGTCTCCTTACAACTTAATACCAATATCTGAAATTGTTGGTGGAAGTTTTGATTTTGACTATTTGCCTGACCTGATTGGTGTTCTTTCTGGAGTGGGTACTGAAAGAGAATTGGAAAGGAATGGTAGCACTACAAAGTTGAATGTTATTGAACTTGAAGCAGAAGGGCATAAGATACAATGTACCCTGTTTGGAAGCTATGTTGACGAGCTTAATAGTTTCATTGCAAGTGGAGAGAACCAAAATGCTATTGTCATTGTTCAGCTGGCCAAAGCCAAGACATTTCAAGATAAAATACATTTGCAGAATTGTCTAAATTGCACAAAACTGGTTTTCAACCCTACTTGCCCTGATGGTATAAGCTTTAGGAACAGGCTTGCTGAAATTGTGGACACACCTTCACCCCTTGCTTTAACACAATTGCAACCTCAACAAAGGGTTGAACCTAGGGATGACTTTCTCTTTAATACACAAAGAAGAACAATGCAAGGGCTTAAGGATTCATCCACTGACTCTGTCTTTGTTGTTATTGGTACAGTAGAGAGGATTGTGAATCAAGACAACTTTTGGTACACCGCCTGCATATGCTCTAAAGCTGTCATACCTGACTCCCAAATGTTTTTTTGTGAGAAATGTGACAAGCACGTGAAGAAGGTTTTTCCTAGGTATTGCTTAAAGATTAGAGCTATTGACCACACTGACTGTGCTACTCTGGTCATCTTTGACAAAGAATGCTCATCTCTTTTTAACAAAAGCTGTGCTGACATGCTTTCTCAACATGAGCAGGCTGTATCTGAGGGTCAGCTTCCTCCTCCGATGCATGCACTTATTGGGCAAACATATCTTTTCAAAGTTGAGACAAAGGCTAATTTTAGTCCAAGATATGAAATATCATTTCGTGTGAAAAAGATTTGTGTTGACCCTGTTGTGATTAATGAGTTTAAGGTTAAGTGGGACCATGAAGAGGCTTTATTTGCCAAACATGCAAATGAAAGTGCATCTCTAAGTTCATTGATAGACAAGGGAAAAGTAGGAGGGTTTGAGGGTTGTTCAAGTATGCTATCTCAGGAACCTATCTCATTATCTGACAATGTTGACAAAGGAAAGGGAAAAACTTTGGCTGTTTGTTCTGAAATTGTTGCAGAGGATTTGATGCCTAAATTTGCAGGAGTTGTTTCTGAACCTGAGGTCAAAGAAGTAATCCCTAAAGCTTCTGATTCATCAACTAAAAGAGAATCTCCTACCAGCATTGATGAGGACATGAACATGCCTCTAAAGCTGCTTAGGAGGAATGTGAAGATAGAAAAGCTTTAG 1668 0.3801 MANLIKFSPISEISSQKTFWNLKGKVIRLWRVSDFNKSTLPFSIEMVLLDDAGNKIHVSIKKTLLYKFKNEIFEGKCYSFENLGVAINGGSYRTTRHSYKLNFQFTTKVQYLPNLKIIRSPYNLIPISEIVGGSFDFDYLPDLIGVLSGVGTERELERNGSTTKLNVIELEAEGHKIQCTLFGSYVDELNSFIASGENQNAIVIVQLAKAKTFQDKIHLQNCLNCTKLVFNPTCPDGISFRNRLAEIVDTPSPLALTQLQPQQRVEPRDDFLFNTQRRTMQGLKDSSTDSVFVVIGTVERIVNQDNFWYTACICSKAVIPDSQMFFCEKCDKHVKKVFPRYCLKIRAIDHTDCATLVIFDKECSSLFNKSCADMLSQHEQAVSEGQLPPPMHALIGQTYLFKVETKANFSPRYEISFRVKKICVDPVVINEFKVKWDHEEALFAKHANESASLSSLIDKGKVGGFEGCSSMLSQEPISLSDNVDKGKGKTLAVCSEIVAEDLMPKFAGVVSEPEVKEVIPKASDSSTKRESPTSIDEDMNMPLKLLRRNVKIEKL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2228 555 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 375 - -
Mal3g2228 555 SUPERFAMILY Nucleic acid-binding proteins 282 422 IPR012340 -
Mal3g2228 555 Gene3D - 5 111 IPR012340 -
Mal3g2228 555 PANTHER REPLICATION FACTOR A 1, RFA1 24 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal3g2228 555 Pfam Domain of unknown function DUF223 45 139 IPR003871 -
Mal3g2228 555 Pfam Replication factor-A C terminal domain 292 409 IPR013955 -
Mal3g2228 555 CDD RPA1_DBD_A_like 22 109 - -
Mal3g2228 555 Gene3D - 270 431 IPR012340 -
Mal3g2228 555 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Mal3g2228 555 Gene3D - 117 249 IPR012340 -
Mal3g2228 555 CDD RPA1_DBD_B_like 142 236 - -
Mal3g2228 555 CDD RPA1_DBD_C 286 422 IPR013955 -
Mal3g2228 555 MobiDBLite consensus disorder prediction 518 540 - -
Mal3g2228 555 SUPERFAMILY Nucleic acid-binding proteins 6 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2228 Mal-Chr3 90464354 90467049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2228 6 422 Core DNA Replication Machinery Family AT4G19130 21.719 8.79e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2228 - - mtr:MTR_4g036240 635.18