Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2200 ATGATGTTATCTAGAACAATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCATATATACAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCTAAATGGACTTCAGAAGAGAATAAGCTCTTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCAGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTTTGATACCAGTTCCTGGTTATACAACTAGCTCTTTTACATTGGATTGGGATAGCAGTGAAGGATATGATGAGTTCAAGCAGTTTTGCAGTGTTGGTGGGAAAAGAGGTGGTTCGACTCGCCCGTCGGAGCAGGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAGGAGCATAGGCAATTTCTGTTGGGTCTGAAAAAGTATGGTAAGGGGGATTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCAACTCAAGTCGCAAGTCATGCTCAAAAGTATTTCATCAGACAACTTTCTGGAGGGAAGGATAAGAGGAGATCCAGTATCCACGATATCACAGTGGTCAATCTCCAAGAAACAAAATCGCCTTCATCAGAAAGTAACAATCCTTCTTCTCCGGACCATTTAATGAAGGTTGCGAATCAACCGCAAAATCATAATTTGTCTGGCATGGTTAAGCAGGAATTTGACTGGAAATTACCAGATGAGGGTATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCATCGTGCGGGATTTCTTCCCACGAATCAAAATCACCGGGGCGTAATGTACTCCGAAGCACTCATCATGGATACCAGTTTTCACCTTTTGATACTATTTTACAAATGCAATCTATGCAGCATCAATGA 942 0.4034 MMLSRTMNRGVEVLSPASYIQNSNWLFQENNGSKWTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDSSEGYDEFKQFCSVGGKRGGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQETKSPSSESNNPSSPDHLMKVANQPQNHNLSGMVKQEFDWKLPDEGMPFVFNSTKGNMFVAPSCGISSHESKSPGRNVLRSTHHGYQFSPFDTILQMQSMQHQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2200 313 Gene3D - 27 94 - -
Mal3g2200 313 CDD SANT 141 186 IPR001005 -
Mal3g2200 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 8 289 IPR043363 -
Mal3g2200 313 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Mal3g2200 313 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Mal3g2200 313 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Mal3g2200 313 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Mal3g2200 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Mal3g2200 313 MobiDBLite consensus disorder prediction 123 142 - -
Mal3g2200 313 MobiDBLite consensus disorder prediction 210 230 - -
Mal3g2200 313 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Mal3g2200 313 CDD SANT 34 80 IPR001005 -
Mal3g2200 313 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
Mal3g2200 313 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Mal3g2200 313 Gene3D - 140 190 - -
Mal3g2200 313 PANTHER MYB TRANSCRIPTION FACTOR MYB51 8 289 - -
Mal3g2200 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Mal3g2200 313 SMART sant 138 188 IPR001005 -
Mal3g2200 313 SMART sant 31 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g2200 Mal-Chr3 90017519 90019273 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g2200 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g2200 - - var:108329798 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2200 3 90017519 90019273 Mal8g1171 8 18262409 18263963 ECH
Mal3g2200 3 90017519 90019273 Mal3g2200 3 90017519 90019273 ECH
Mal3g2200 3 90017519 90019273 Mal8g2050 8 42384291 42385919 ECH
Mal3g2200 3 90017519 90019273 Mal2g3347 2 50212009 50213507 ECH