Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g2160 ATGCTTCAGATTCGGCTTAGCAAGAATCCATCCTCTGATGGGTCGGCAGGTGTGAAGCAATCACCTGTCGAGACTGTTACCGTTGCATGCCCTGACCATTTAGTCCTTGCTGATCTTCCTGTTGCAAAGGGTATTGGTACTGCGACTGCTTCTTCAGTTGTTAGGAATGTGGGCCGTAGATCCCGCCGCCAGCTTGGTGAGCGTGTTCATTTCTGTGTTCGCTGTGATTTCCCGATTGCAATTTATGGAAGGCTGAGCCCTTGTGACCATGCTTTCTGTCTCGATTGTGCTAGAAGTGACTCATCGTGTTACCTGTGTGAAGAACGAATCCAGAAGATTCAGACTATCAAAGTGATGGAAGGAATCCTATTATGTGCAGCTCCCCATTGTCTCAAGTCATTCTTGAAGAGAGCTGATTTTGAATCTCATATCCATGAATACCACGCCGATCTTCTTCGCTCCAATGCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGGCAAGTTTTTTCTCCAGGTTCAAATTCTCAACATCATGATCTGGAAGACAGAACCCGTCGGCAACCACCAAGAGATCAAGCTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTCTTCGGCCAACAACCACATCATCCTTCAGATTCCATGTCTGGTTCTGTCGGAGGTATGCAACAGGGTTTTCATCAACAAAGTTTCGACATGCAGCAGCATCCCCCACCAGAACATTCCCAGTTTACCGACAGGCAGCAATCAGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCCGCCAATGTCCCCCCACACTCAAACCCAATGCTGAACCCACCTGTGCCATTTGGTTATCCCCCTTACCCGCAAGACCGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCATCTTCTGATATTGGTGGAGACCCAAATTTATTAATGGGTTACCCACAAGGTGGCCCAAATGGCCCGAATTTTCAAGGAAATTATCCCCAGCCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGGTGGTGGTATGATTGTGGATCCAAGGGATTCCAAAGGTATCTTGGCACCACAGCCCATGCCTCTCCCACCACCACCACCACCTCCAGCTCACATGTTGAAACCAAACTACTATCCTGGTGATCATGGACATGATGGTCAAGGTTATGGTTGGCAGCATGATAACCGTGACAGCTTTAATGGTCATGGCTGA 1311 0.4836 MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTATASSVVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEERIQKIQTIKVMEGILLCAAPHCLKSFLKRADFESHIHEYHADLLRSNADKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQHHDLEDRTRRQPPRDQAPSRPTMQQKPPFFGQQPHHPSDSMSGSVGGMQQGFHQQSFDMQQHPPPEHSQFTDRQQSVGPDNSFPEYPTMHPAQPANVPPHSNPMLNPPVPFGYPPYPQDRAQPFYAAPYDMPRQDSSSDIGGDPNLLMGYPQGGPNGPNFQGNYPQPWNAAGVPFEQAQGGGMIVDPRDSKGILAPQPMPLPPPPPPPAHMLKPNYYPGDHGHDGQGYGWQHDNRDSFNGHG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g2160 436 MobiDBLite consensus disorder prediction 166 193 - -
Mal3g2160 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Mal3g2160 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 405 IPR040383 GO:0016567|GO:0061630
Mal3g2160 436 MobiDBLite consensus disorder prediction 1 20 - -
Mal3g2160 436 MobiDBLite consensus disorder prediction 194 208 - -
Mal3g2160 436 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Mal3g2160 436 MobiDBLite consensus disorder prediction 209 276 - -
Mal3g2160 436 MobiDBLite consensus disorder prediction 387 436 - -
Mal3g2160 436 MobiDBLite consensus disorder prediction 155 277 - -
Mal3g2160 436 MobiDBLite consensus disorder prediction 420 436 - -
Mal3g2160 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Mal3g2160 436 MobiDBLite consensus disorder prediction 390 407 - -
Mal3g2160 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 405 - -
Mal3g2160 436 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g2160 1 432 C2H2 Transcription Factor Family AT5G01160 44.144 3.36e-106 317